View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_low_7 (Length: 329)
Name: NF10608_low_7
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_7 |
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| [»] scaffold1052 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 318
Target Start/End: Original strand, 6182465 - 6182754
Alignment:
| Q |
31 |
ttgagttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
129 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182465 |
ttgagttttaattaattcaatttgaactttcaacaggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
6182564 |
T |
|
| Q |
130 |
gtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacg |
228 |
Q |
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||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182565 |
gtagagtgaaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatggattcgaaacagcgttgtacccatgtccatgtcaccacg |
6182664 |
T |
|
| Q |
229 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6182665 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctcttgtcttcatcctcgtcactccagtgttccgtttgcttctcttcat |
6182754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1052 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold1052
Description:
Target: scaffold1052; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 31 - 318
Target Start/End: Original strand, 706 - 998
Alignment:
| Q |
31 |
ttgagttttaattaattcaatttggactttcaacaggtgacaa----aactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttg |
126 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
706 |
ttgagatttaattaattcaatttggactttcaacaggtgacaacagaaactatgataaaatcaagaaataggacacacaaattcattgttgttgttgtta |
805 |
T |
|
| Q |
127 |
aaggtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcacc |
225 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
806 |
gaggtaaagtggaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatggattcgaaacagcgttgtacccatgtccatgtcacc |
905 |
T |
|
| Q |
226 |
acgacaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
906 |
acgacaacctcacaacggtgaaatcctcttcgactatgccatcgctctcgtcttcatcctcgtcactccagtgttccgtttgcttctcttcat |
998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 31 - 318
Target Start/End: Original strand, 5101200 - 5101487
Alignment:
| Q |
31 |
ttgagttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5101200 |
ttgagttttaattaattcaatttggactttcaacaggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
5101299 |
T |
|
| Q |
130 |
gtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacg |
228 |
Q |
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|
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
5101300 |
gtaaagtggaaaaggaatgt--gttttaaaacttgtttttttggtttgatgttggaatctggattcggaacagcattgtacccatgtccatgtcaccacg |
5101397 |
T |
|
| Q |
229 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcat |
318 |
Q |
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| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5101398 |
ataacctcacaacggtgaaatcctctttgactatgtcatcgttctcgtcttcatcctcgtcactccagtgttccgtttgcttctcttcat |
5101487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 34 - 318
Target Start/End: Original strand, 32356241 - 32356528
Alignment:
| Q |
34 |
agttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
132 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32356241 |
agttttaattaattcaatttgaacttttaacgggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
32356340 |
T |
|
| Q |
133 |
aagtggaaaaggaatatttgttttaaaacttgttttttg--gtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacgac |
230 |
Q |
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|||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32356341 |
gagtgaaaaaggaatatgtgttttaaaacttgtttttttttgtttgattttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacgac |
32356440 |
T |
|
| Q |
231 |
aacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcat |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
32356441 |
aacctcacaacggtgaaatcctcttcgactatgtcttcgctcttgtcttcatcctcgtcactccagtgttctgtttgcttctcttcat |
32356528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 20574 - 20646
Alignment:
| Q |
73 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaagga |
145 |
Q |
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|||||||| |||||| |||||||||||||||||| | ||||||||||||||||| | ||||| |||||||||| |
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|
| T |
20574 |
aaactatgataaaattaacaaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaagga |
20646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 10200348 - 10200279
Alignment:
| Q |
73 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaa |
142 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| | ||||| ||||||||||| | ||||| ||||||| |
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|
| T |
10200348 |
aaactatgataaaattaacaaataggacacacaattccattgctgttgttgttggaagtaaaatggaaaa |
10200279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 325876 - 325832
Alignment:
| Q |
73 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttg |
117 |
Q |
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|||||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
325876 |
aaactatgataaaattaacaaataggacacacaatttcattgttg |
325832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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