View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10609_low_1 (Length: 395)
Name: NF10609_low_1
Description: NF10609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10609_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 64 - 388
Target Start/End: Complemental strand, 55330158 - 55329834
Alignment:
| Q |
64 |
ttaccacaattcggttctgtgaggttgtattagacccaaccacaaattataatgtagtatcatagctacctgctactagatcatccaccatttatatcca |
163 |
Q |
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| T |
55330158 |
ttaccataagtcggttttgtgaggttgtattaagtccaaccataaattataacgtagtatcatagctacctgttactagatcatccaccatttatatcca |
55330059 |
T |
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| Q |
164 |
cgcatttagttcaatattgttggcgtgagaggatgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgtttaaaactgggagtaatttt |
263 |
Q |
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| T |
55330058 |
cgcatttagttcaatattgttgacgtgagaggatgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgtttaaaactgagagtaatttt |
55329959 |
T |
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| Q |
264 |
cacctcaaaagtcaattttttgggattcgattaggccaaccagaaattctaagtccattttgttacaataatttgtaaataaaatcaatatactgaattt |
363 |
Q |
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| T |
55329958 |
cagctcaaaaataaattttttgggattcggttaggccaaccagaaattctaagtccattttgttacaataatttgtaaataaaatcaatatactgaattt |
55329859 |
T |
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| Q |
364 |
ctattggatgtcagtatactctgtg |
388 |
Q |
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| T |
55329858 |
ctattggatgtcagtatactctgtg |
55329834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 55330223 - 55330185
Alignment:
| Q |
18 |
aaaagagtatcacattggttgggagatagcttaaacaag |
56 |
Q |
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| T |
55330223 |
aaaagagtatcatattggttgggagatagcttaaacaag |
55330185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 7572603 - 7572542
Alignment:
| Q |
185 |
ggcgtgagaggatgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgttta |
246 |
Q |
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| T |
7572603 |
ggcgtgagggggtgtgttaaagagtcctacattagttgagagatggcctgaacaagtgttta |
7572542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 10615059 - 10614969
Alignment:
| Q |
197 |
tgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgtttaaaactgggagtaattttcacctcaaaagtcaattttttggg |
287 |
Q |
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| T |
10615059 |
tgtgttaaagagtcccacatcggataaaatatgacatgaacatgtgtttacaaatgggggtaatcttcacctcacaagccgattttgtggg |
10614969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 10615594 - 10615643
Alignment:
| Q |
197 |
tgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgttta |
246 |
Q |
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| T |
10615594 |
tgtgttaaagagtcctacatcgaacaaaatatgacatgaacatgtgttta |
10615643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 47849706 - 47849796
Alignment:
| Q |
148 |
ccaccatttatatccacgcatttagttcaatattgttgg-cgtgagaggatgtgttaaagagtcctacattgattaaaagatgacatgaac |
237 |
Q |
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| T |
47849706 |
ccaccatttatatccacgcactaagctcaatagtattgggcgtgaaggtgtgtgttaaagagtcccacatcggataaaagatgacatgaac |
47849796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 13210703 - 13210747
Alignment:
| Q |
174 |
tcaatattgttggcgtgagaggatgtgttaaagagtcctacattg |
218 |
Q |
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| T |
13210703 |
tcaatagtgttggcgtgagggggtgtgttaaagagtcccacattg |
13210747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 11234259 - 11234299
Alignment:
| Q |
75 |
cggttctgtgaggttgtattagacccaaccacaaattataa |
115 |
Q |
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| T |
11234259 |
cggttttgtggggttgtattaggcccaaccacaaattataa |
11234299 |
T |
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