View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10609_low_3 (Length: 306)
Name: NF10609_low_3
Description: NF10609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10609_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 39980149 - 39980432
Alignment:
| Q |
1 |
agcagaagaatattgatccataacataaaggtgaaagtaannnnnnnnnngtaaaccaacaatattttcggtgaaatagttgttacgatccaacaataat |
100 |
Q |
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| T |
39980149 |
agcagaagaatattgatccataacataaaggtgaaagtaatttttttt--gtaaaccaacaatattttgggtgaaatagttcttacaatgcaacaataac |
39980246 |
T |
|
| Q |
101 |
cgtgaaaagacatatatgcggttaatgtgtcacctcatgtacactaacgatacttcatacactttcatgtttcaaaaatgtttttacttatttagatgct |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39980247 |
cgtgaagcgacatatatgcggttaatgtgtcacctcatgtacactgacgacacttcatacactttcatgtttcaaaaatgtttttacttatttagatgct |
39980346 |
T |
|
| Q |
201 |
aagattaccgatctttacaatttcaatgatcaattcgatgattttctttttcctttgcaaaaagttgtacaaaagattgattgaccg |
287 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39980347 |
aagattacggatctttacaatttcaatgatcaattcagtgatttt-tttttcctttggaaaaagttgtacaaaagattgattgaccg |
39980432 |
T |
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