View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10610_high_4 (Length: 223)
Name: NF10610_high_4
Description: NF10610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10610_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 924172 - 923986
Alignment:
| Q |
20 |
acaactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctcccaagtttctat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
924172 |
acaactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctaccaagtttctat |
924073 |
T |
|
| Q |
120 |
ggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
924072 |
ggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaat |
923986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 939450 - 939304
Alignment:
| Q |
22 |
aactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctcccaagtttctatgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
939450 |
aactgatgaaaaagtggccaagttctgctcttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatgg |
939351 |
T |
|
| Q |
122 |
tgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctct |
168 |
Q |
| |
|
||||||||||||||| | || ||||||| ||||| |||||||||| |
|
|
| T |
939350 |
tgcaaagcaatatgccttaacaatcgtgctattggccgtgtttctct |
939304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 928524 - 928384
Alignment:
| Q |
23 |
actgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctcccaagtttctatggt |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||| ||| | ||||||||| || | |
|
|
| T |
928524 |
actgatgaaaaggtggccaagttctgctcttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgtt |
928425 |
T |
|
| Q |
123 |
gcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtt |
163 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
928424 |
gcaaagcaatatgcattaatgatcgtgctattggctgtgtt |
928384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University