View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10610_low_10 (Length: 223)
Name: NF10610_low_10
Description: NF10610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10610_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 924172 - 923986
Alignment:
| Q |
20 |
acaactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctcccaagtttctat |
119 |
Q |
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| T |
924172 |
acaactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctaccaagtttctat |
924073 |
T |
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| Q |
120 |
ggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaat |
206 |
Q |
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| T |
924072 |
ggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaat |
923986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 939450 - 939304
Alignment:
| Q |
22 |
aactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctcccaagtttctatgg |
121 |
Q |
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| T |
939450 |
aactgatgaaaaagtggccaagttctgctcttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatgg |
939351 |
T |
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| Q |
122 |
tgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctct |
168 |
Q |
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| T |
939350 |
tgcaaagcaatatgccttaacaatcgtgctattggccgtgtttctct |
939304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 928524 - 928384
Alignment:
| Q |
23 |
actgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctcccaagtttctatggt |
122 |
Q |
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| T |
928524 |
actgatgaaaaggtggccaagttctgctcttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgtt |
928425 |
T |
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| Q |
123 |
gcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtt |
163 |
Q |
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| T |
928424 |
gcaaagcaatatgcattaatgatcgtgctattggctgtgtt |
928384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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