View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10610_low_2 (Length: 374)
Name: NF10610_low_2
Description: NF10610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10610_low_2 |
 | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 888701 - 888355
Alignment:
| Q |
17 |
aaaatgtttggaaattcttgtatcctatggtctaataacacacattatggactgtgtttgcacttagcagaaatcacagaaagttatgttttgaggattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888701 |
aaaatgtttggaaattcttgtatcctatggtctaataacacacattatggactgtgtttgcacttagcagaaatcacagaaagttatgttttgaggattt |
888602 |
T |
|
| Q |
117 |
caataaagatgacaatatttgctttttattttattaatgaaattctgtttttgtcatttaagcaaaaatcaggttctacaatgctatcatatatgtgttc |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888601 |
caataaagatgacaatatttgcttgttattttattaatgaaattctgtttttgtcatttaagcaaaaatcaggttctacaatgctatcatatatgtgttc |
888502 |
T |
|
| Q |
217 |
ttagtcatttagtagttataactatggtcatcgctatctcacgatatatgcgagtcgtaacacgatgcagtaatatgtatatcactacctgattttgcca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888501 |
ttagtcatttagtagttataactatggtcatcgctatctcacgatatatgcgagtcgtaacacgatgcagtaatatgtatatcactacctgattttgcca |
888402 |
T |
|
| Q |
317 |
catttgatgatcatggtacaagaaaggactgtcacaaattggttcat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888401 |
catttgatgatcatggtacaagaaaggactgtcacaaattggttcat |
888355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 1002671 - 1002938
Alignment:
| Q |
18 |
aaatgtttggaaattcttgtatcctatggtctaataacacacattatggactgtgtttgca-------cttagcagaaatcacagaaagtt---atgttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
1002671 |
aaatgtttggaaattcttgtatcctatagtctaataacacacattatggactgtgtttgcagtttgcacttagcagaaatcacagaaagttgttatgttc |
1002770 |
T |
|
| Q |
108 |
tgaggatttcaataaagatgacaatatttgctttttattttattaatgaaattctgtttttgtcatttaagcaaaaatcaggttctacaatgctatcata |
207 |
Q |
| |
|
||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |
|
|
| T |
1002771 |
tgaggatttcaataa---tggaaatatttgcatgctattttattaatgaaattctgtttttgccatttaagcaaaaaacaggttctacaatgctatcgta |
1002867 |
T |
|
| Q |
208 |
-tatgtgttcttagtcatttagtagttataactatggtcatcgctatctcacgatatatgcgagtcgtaac |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||| |
|
|
| T |
1002868 |
ttatgtgttcttagtcatttagtagttataactatggtcgtcgctctgtcacgatatatgtgagtcgtaac |
1002938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 496177 - 496098
Alignment:
| Q |
280 |
gatgcagtaatatgtatatcactacctgattttgccacatttgatgatcatggtacaagaaaggactgtcacaaattggttc |
361 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| || ||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
496177 |
gatgcagtaatatgtat--cactaactgattttgccacatgtggtgatcatagtacacgaaaggactgtcacaaatcggttc |
496098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 16373 - 16451
Alignment:
| Q |
285 |
agtaatatgtatatcactacctgattttgccacatttgatgatcatggtacaagaaaggactgtcacaaattggttcat |
363 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16373 |
agtaatatgtatattactacctgattttgccacatgtgatgatcatggtacaagaaaggactgtcacaaattggttcat |
16451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 7553339 - 7553384
Alignment:
| Q |
145 |
ttttattaatgaaattctgtttttgtcatttaagcaaaaatcaggt |
190 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
7553339 |
ttttattaatgcaattcggtttttgtcatttaagcaaaaaccaggt |
7553384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University