View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10610_low_3 (Length: 330)
Name: NF10610_low_3
Description: NF10610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10610_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 888701 - 888404
Alignment:
| Q |
17 |
aaaatgtttggaaattcttgtatcctatggtctaataacacacattatggactgtgtttgcacttagcagaaatcacagaaagttatgttttgaggattt |
116 |
Q |
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| T |
888701 |
aaaatgtttggaaattcttgtatcctatggtctaataacacacattatggactgtgtttgcacttagcagaaatcacagaaagttatgttttgaggattt |
888602 |
T |
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| Q |
117 |
caataaagatgacaatatttgctttttattttattaatgaaattctgtttttgtcatttaagcaaaaatcaggttctacaatgctatcatatatgtgttc |
216 |
Q |
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| T |
888601 |
caataaagatgacaatatttgcttgttattttattaatgaaattctgtttttgtcatttaagcaaaaatcaggttctacaatgctatcatatatgtgttc |
888502 |
T |
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| Q |
217 |
ttagtcatttagtagttataactatggtcatcgctatctcacgatatatgcgagtcgtaacacgatgcagtaatatgtatatcactacctgattttgc |
314 |
Q |
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| T |
888501 |
ttagtcatttagtagttataactatggtcatcgctatctcacgatatatgcgagtcgtaacacgatgcagtaatatgtatatcactacctgattttgc |
888404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 1002671 - 1002938
Alignment:
| Q |
18 |
aaatgtttggaaattcttgtatcctatggtctaataacacacattatggactgtgtttgca-------cttagcagaaatcacagaaagtt---atgttt |
107 |
Q |
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| T |
1002671 |
aaatgtttggaaattcttgtatcctatagtctaataacacacattatggactgtgtttgcagtttgcacttagcagaaatcacagaaagttgttatgttc |
1002770 |
T |
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| Q |
108 |
tgaggatttcaataaagatgacaatatttgctttttattttattaatgaaattctgtttttgtcatttaagcaaaaatcaggttctacaatgctatcata |
207 |
Q |
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| T |
1002771 |
tgaggatttcaataa---tggaaatatttgcatgctattttattaatgaaattctgtttttgccatttaagcaaaaaacaggttctacaatgctatcgta |
1002867 |
T |
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| Q |
208 |
-tatgtgttcttagtcatttagtagttataactatggtcatcgctatctcacgatatatgcgagtcgtaac |
277 |
Q |
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| T |
1002868 |
ttatgtgttcttagtcatttagtagttataactatggtcgtcgctctgtcacgatatatgtgagtcgtaac |
1002938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 7553339 - 7553384
Alignment:
| Q |
145 |
ttttattaatgaaattctgtttttgtcatttaagcaaaaatcaggt |
190 |
Q |
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| T |
7553339 |
ttttattaatgcaattcggtttttgtcatttaagcaaaaaccaggt |
7553384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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