View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10610_low_9 (Length: 227)
Name: NF10610_low_9
Description: NF10610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10610_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 924750 - 924524
Alignment:
| Q |
1 |
acctgtccaaaaataacttaggtgttggagtatatatgatttagataaaaacaattacattttgtattttgatcacaaatannnnnnnggttaattgcga |
100 |
Q |
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| T |
924750 |
acctgtccaaaaataacttaggtgttggagtatatatgatttagataaaaacaattacattttgtattttgatcacaaatatttttttggttaattgcga |
924651 |
T |
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| Q |
101 |
tgattatagttatatatcaataatggatgattaatttatttttctctacaagtattnnnnnnnntatataatttttgctagcatatataaagaatttcat |
200 |
Q |
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| T |
924650 |
tgattatagttatatatcaataatggatgattaatttatttttctctacaagtattaaaaaaataatataatttttgctagcatatataaagaatttcat |
924551 |
T |
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| Q |
201 |
aggcttggatccattttaatgcatatt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
924550 |
aggcttggatccattttaatgcatatt |
924524 |
T |
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