View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_high_11 (Length: 305)
Name: NF10611_high_11
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 31137768 - 31137490
Alignment:
| Q |
17 |
catgtacacatttttaattacatatttgaaatttgaaatgatcaaatggatagaaattcttgaaccacaaactatccatccctaattgaccaaaacaatt |
116 |
Q |
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| T |
31137768 |
catgtacacatttttaattacatatttgaaatttgaaatgatcatatggatagaaattcttgaaccacaaactatccatccctaattgaccaaaacaatt |
31137669 |
T |
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| Q |
117 |
ctggtaatcttgtatcacgtgaaaataataaattcacatttatgaaaccatcttgatttgaatttctttttggctcggtaaatgtatacatatattacta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137668 |
ctggtaatcttgtatcacgtgaaaataataaattcacatttatgaaaccatcttgatttgaatttctttttggctcggtaaatgtatacatatattacta |
31137569 |
T |
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| Q |
217 |
agtgaatggaaatataatcatatattgatttggaggtggtccatgctatgctacaatgttattattatctctaataatacgtt |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137568 |
agtgaatggaaatataatcatat----atttggaggtggtccatgctatgctacaatgttattattatctctaataatacgtt |
31137490 |
T |
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