View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10611_high_16 (Length: 271)
Name: NF10611_high_16
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 41111271 - 41111095
Alignment:
| Q |
17 |
aaagaccatgacaa-tgccccataaaaacctttaaattaagcaaaatataaacacaagcatgaaattaatttattggaagaaaatgtaagttctttttac |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||| |
|
|
| T |
41111271 |
aaagaccatgacaaatgccccataaaaacctttaaactaagcaaaatataaacacaagcatgaaattaatttattgaaagaaaatataaatcctttttat |
41111172 |
T |
|
| Q |
116 |
gtttgtttgacaatattaacttcacacacctatattttatgatttcttaatttgtcttataagttgtgcatatgaaa |
192 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41111171 |
gtttgtttgataatattaacttcacacacctatattttatgatttcttaatttgtcttataaattgtgcatatgaaa |
41111095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 20025173 - 20025265
Alignment:
| Q |
45 |
ctttaaattaagcaaaatataaacacaagcatgaa-attaatttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaactt |
137 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| |||||||||| ||||||||||| |||| | |||| ||||||||||||||||||||| |
|
|
| T |
20025173 |
cttttaattaagcaaaatataaa-acaaacatgaagattaatttatcagaagaaaatgttagttgtatttatatttgtttgacaatattaactt |
20025265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 31948075 - 31948179
Alignment:
| Q |
80 |
attaatttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaacttcacacacctatattttatgatttcttaatttgtcttataagt |
179 |
Q |
| |
|
||||| ||||| |||||| |||| ||| |||||| ||||||||||||||||||||||| | | ||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
31948075 |
attaagttattagaagaacatgttggttgattttacatttgtttgacaatattaacttcagata--tatatcttataatttcttatttttacttataagt |
31948172 |
T |
|
| Q |
180 |
tgtgcat |
186 |
Q |
| |
|
|| |||| |
|
|
| T |
31948173 |
tgcgcat |
31948179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 7960982 - 7960925
Alignment:
| Q |
80 |
attaatttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaactt |
137 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
7960982 |
attaatttattagaagaaaatgttagttatttttatatttgtttgacaatattaactt |
7960925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 36145077 - 36145157
Alignment:
| Q |
59 |
aaatataaacacaagcatgaa-attaatttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaacttca |
139 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||| ||||||||| | | ||||||| | ||||||||||||||| ||||||| |
|
|
| T |
36145077 |
aaatataaa-acaagcttgaagattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttca |
36145157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 5061419 - 5061517
Alignment:
| Q |
39 |
aaaaacctttaaattaagcaaaatataaacacaagcatgaaattaatttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaacttc |
138 |
Q |
| |
|
|||| ||||| || ||||||||||||||| ||| ||| |||||| |||||| ||||||||| | |||| |||||| |||||||| |||||| |||||| |
|
|
| T |
5061419 |
aaaagccttttaactaagcaaaatataaa-acagacattaaattattttattagaagaaaatattagttttttttatatttgtttggcaatatcaacttc |
5061517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 48583308 - 48583387
Alignment:
| Q |
85 |
tttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaacttcacacacctatattttatgatttcttaattt |
168 |
Q |
| |
|
|||||| ||||||||||| | ||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||| |
|
|
| T |
48583308 |
tttattagaagaaaatgttatttctttttatatttgtttgacaattttaacttcggacac----attttataatttcttaattt |
48583387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 9357887 - 9357946
Alignment:
| Q |
78 |
aaattaatttattggaagaaaatgtaagttctttttacgtttgtttgacaatattaacttc |
138 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| |||||| |||||||||||| ||||||||| |
|
|
| T |
9357887 |
aaattaatttattagaagaaagtgttagtt-tttttatatttgtttgacaacattaacttc |
9357946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University