View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_high_24 (Length: 230)
Name: NF10611_high_24
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_high_24 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 55907854 - 55907722
Alignment:
| Q |
98 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtca |
197 |
Q |
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| T |
55907854 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtca |
55907755 |
T |
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| Q |
198 |
ttgttacgtagagaagcaatgttggaacaaatg |
230 |
Q |
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| T |
55907754 |
ttgttacgtagagaagcaatgttggaacaaatg |
55907722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 547943 - 548021
Alignment:
| Q |
149 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaa |
227 |
Q |
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| T |
547943 |
gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaa |
548021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 3437748 - 3437708
Alignment:
| Q |
149 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaa |
189 |
Q |
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| T |
3437748 |
gtcaagtacttcaagtaaagggaagcaatcagagataagaa |
3437708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 1036790 - 1036658
Alignment:
| Q |
98 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
1036790 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatca |
1036691 |
T |
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| Q |
198 |
ttgttacgtagagaagcaatgttggaacaaatg |
230 |
Q |
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||||||| || |||||||||||||||||||||| |
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| T |
1036690 |
ttgttacatatagaagcaatgttggaacaaatg |
1036658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1045004 - 1044903
Alignment:
| Q |
1 |
aaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctctttattcttggtgaagcttacttcctagtaacctaagtcagcaaagcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1045004 |
aaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctgtttattcctggtgaagcttacttcctagtaacctaagtcagcaaagcca |
1044905 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
1044904 |
aa |
1044903 |
T |
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