View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_high_4 (Length: 403)
Name: NF10611_high_4
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 39258205 - 39257836
Alignment:
| Q |
19 |
ataacacttatgaatatatatgttataatgcatttatgtgtaatttaaatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttca |
118 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39258205 |
ataacacttatga----atatgttataatgcatttatgtgtaagttaaatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttca |
39258110 |
T |
|
| Q |
119 |
aacttagtggtgtatttgacaaatcagcatcatgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39258109 |
aacttagtggtgtatttgacaaatcagcatcatgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttg |
39258010 |
T |
|
| Q |
219 |
taggagcttacgtagctgatgcatatcttggtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatgaatgtgagataaggattttga |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39258009 |
taggagcttacgtagctgatgcatatcttggtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatgaatgtgagataaggattttga |
39257910 |
T |
|
| Q |
319 |
aatacatgcatcactaactttattctatgttatctcgatgcattatttatgcttgacatgatttttgttttctt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39257909 |
aatacatgcatcactaactttattctatgttatctcgatgcattatttatgcttgacatgatttttgttttctt |
39257836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 66 - 297
Target Start/End: Complemental strand, 39196378 - 39196147
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtgga |
165 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| | ||| | |||||| ||| |||||||| |||||||| |
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| T |
39196378 |
aatttatagggtatgaagtgtttgagaggatggcttactacgggatagcatcaaacttagtgatctatctaacaaataagctccatgagggaactgtgga |
39196279 |
T |
|
| Q |
166 |
atcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggaccttt |
265 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| ||||| ||| |||| || || |||||||| |
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| T |
39196278 |
atctgcaaacaacgttagcaactgggcgggttcggtgtggatgatgccacttgtaggagcttacatagccgatgcttattttggccgctattggaccttc |
39196179 |
T |
|
| Q |
266 |
gtagttgcatcgtgcatttatctcttggtatg |
297 |
Q |
| |
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||| ||||||| |||||||||||||||||||| |
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| T |
39196178 |
gtaattgcatcatgcatttatctcttggtatg |
39196147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 66 - 297
Target Start/End: Complemental strand, 39225086 - 39224855
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtgga |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| | ||| | ||||| ||| |||| ||||||||||||| |
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|
| T |
39225086 |
aatttatagggtatgaagtgtttgagaggatggcttactacgggatagcatcaaacttagtgatttatctaacaaacaagcttcatcagggtactgtgga |
39224987 |
T |
|
| Q |
166 |
atcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggaccttt |
265 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| | || ||||| ||| |||| || || ||||||||| |
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| T |
39224986 |
agcttcaaacaacgttagcaactgggcaggttcggtgtggatgatgccacttgtaggagcttacattgccgatgcttattttggccgctattggaccttt |
39224887 |
T |
|
| Q |
266 |
gtagttgcatcgtgcatttatctcttggtatg |
297 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
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|
| T |
39224886 |
gtagttgcatcatgcatttatctcttggtatg |
39224855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 66 - 298
Target Start/End: Complemental strand, 39240586 - 39240354
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtgga |
165 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| ||| ||| | |||||||||||||||||| | ||||| ||| ||| ||||||||||||| |
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|
| T |
39240586 |
aatttataggttatgaattgtttgagaggatggcttactatggaatatcatcaaacttagtggtgtatctaacaaaaaagctccatcagggtactgtgga |
39240487 |
T |
|
| Q |
166 |
atcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggaccttt |
265 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||||| |
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|
| T |
39240486 |
atcttcaaacaatattagcaattggggaggatcagtttggttgatgccacttgcaggagcttatgtagctgatgcttatcttggccgatattggaccttt |
39240387 |
T |
|
| Q |
266 |
gtagttgcatcgtgcatttatctcttggtatga |
298 |
Q |
| |
|
||| ||||||| |||||||| ||| |||||||| |
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|
| T |
39240386 |
gtaattgcatcatgcatttacctcatggtatga |
39240354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 66 - 297
Target Start/End: Complemental strand, 39217988 - 39217757
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtgga |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| | ||| | ||| | ||| |||||||| |||||||| |
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|
| T |
39217988 |
aatttatagggtatgaagtgtttgagaggatggcttactacgggatagcatcaaacttagtgatctatctaacagacaagctccatgagggaactgtgga |
39217889 |
T |
|
| Q |
166 |
atcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggaccttt |
265 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| | || ||||||||||||||||||||||||||| |||| ||||| ||| | ||||| || ||||||||| |
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|
| T |
39217888 |
atctgcaaacaacgttagcaactggaaggggttggtgtggatgatgccacttgtaggagcttacatagccgatgcttatttcggtcgctattggaccttt |
39217789 |
T |
|
| Q |
266 |
gtagttgcatcgtgcatttatctcttggtatg |
297 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| |
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|
| T |
39217788 |
gtaattgcatcatgcatttatctcttggtatg |
39217757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 39179299 - 39179066
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtgga |
165 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||| || ||| ||||| |||||||||||||||||| | |||| | | | ||| |||||||||||||| |
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|
| T |
39179299 |
aatttatagtgtatgaagtgtttgaaaggatggctttctatggaatagcatcaaacttagtggtgtatctaacaagtaaacttcacgagggtactgtgga |
39179200 |
T |
|
| Q |
166 |
atcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggaccttt |
265 |
Q |
| |
|
|| ||||||||| | ||||| | || |||| |||| |||||||||||||||| |||||| ||| |||||||||| |||||||| |||| | ||||||| |
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|
| T |
39179199 |
gtcatcaaacaacataagcaacttggggggtgcagtgtggatgatgccacttgcaggagcctacatagctgatgcctatcttggaagatatttgaccttt |
39179100 |
T |
|
| Q |
266 |
gtagttgcatcgtgcatttatctcttggtatgaa |
299 |
Q |
| |
|
|| ||||||| ||||||||| || ||||||||| |
|
|
| T |
39179099 |
gtgattgcatcatgcatttatttcatggtatgaa |
39179066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 267
Target Start/End: Complemental strand, 39261972 - 39261777
Alignment:
| Q |
72 |
tagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtggaatcttc |
171 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||||||||| ||||| ||||| ||||| | ||||| ||| |||||||||||||| ||||||| |
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|
| T |
39261972 |
tagggtatgaaatgattgaaaggatggcatactatgggatagcatcaaatctagtgttgtatctaacaaagaagctccatgagggtactgtcaaatcttc |
39261873 |
T |
|
| Q |
172 |
aaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggacctttgt |
267 |
Q |
| |
|
|||| | || | |||||||| ||| |||||||||| |||||| | | ||||||||| |||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
39261872 |
aaaccatgtcaccaattgggtcggtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcggtcgatattggacctttgt |
39261777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 39191920 - 39191808
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtatttgacaaatcagcatcatgagggtactgtgga |
165 |
Q |
| |
|
|||||||| ||||||| |||| || |||||||||| || || ||| | |||||||||||||||||| | |||| | | | ||| |||||||||||||| |
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|
| T |
39191920 |
aatttataatgtatgaagtgttggaaaggatggctttctacggaatatcatcaaacttagtggtgtatctaacaagtaaacttcacgagggtactgtgga |
39191821 |
T |
|
| Q |
166 |
atcttcaaacaac |
178 |
Q |
| |
|
|| ||||||||| |
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|
| T |
39191820 |
gtcatcaaacaac |
39191808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 39220811 - 39220744
Alignment:
| Q |
66 |
aatttatagggtatgaaatgtttgagaggatggcttactttgggatagcttcaaacttagtggtgtat |
133 |
Q |
| |
|
||||||||| ||| ||| ||||||| ||||| |||| || ||| ||||| |||||||||||||||||| |
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|
| T |
39220811 |
aatttatagtgtacgaagtgtttgaaaggatagctttctatggaatagcatcaaacttagtggtgtat |
39220744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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