View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_1 (Length: 677)
Name: NF10611_low_1
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 32158288 - 32158724
Alignment:
| Q |
17 |
cattattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggtttctctgacattggcatatta |
116 |
Q |
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| T |
32158288 |
cattattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggtttctctgacattggcatatta |
32158387 |
T |
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| Q |
117 |
tatgaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagtttttatttcataatatgaacacaacctactccaacatgttccaaagta |
216 |
Q |
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| T |
32158388 |
tatgaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagttgttatttcataatatgaacacaacctactccaacatgttccaaagta |
32158487 |
T |
|
| Q |
217 |
tatacagacactgatgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttggcaataacattgccggtagtttt |
316 |
Q |
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| T |
32158488 |
tatacagacactgatgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttggcaataacattgccggtagtttt |
32158587 |
T |
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| Q |
317 |
ggacatgggcacacattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaagg |
416 |
Q |
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| T |
32158588 |
ggacatgggcacacattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaagg |
32158687 |
T |
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| Q |
417 |
tgtgttatttgaacgatcatttacatgacaacttacg |
453 |
Q |
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| T |
32158688 |
tgtgttatttgaacgatcatttgcatgacaacttacg |
32158724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 536 - 664
Target Start/End: Original strand, 32158807 - 32158935
Alignment:
| Q |
536 |
ttatcacaaattaaatgtacaaatattatttctctatttttaacttaaacaagggaattatttatttgtttgacttatgagtacagtagtgtgccctacc |
635 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32158807 |
ttatcacagattaaatgtacaaatattatttctctacttttaacttaaacaagggaattatttatttgtttgacttatgagtacagaagtgtgccctacc |
32158906 |
T |
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| Q |
636 |
ctctggctttgcctcaagctctctgctcc |
664 |
Q |
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| T |
32158907 |
ctctggctttgcctcaagctctctgctcc |
32158935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 6884943 - 6884901
Alignment:
| Q |
536 |
ttatcacaaattaaatgtacaaatattatttctctatttttaa |
578 |
Q |
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| T |
6884943 |
ttatcacaaattagttgtacaaatatcatttctctatttttaa |
6884901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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