View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_10 (Length: 358)
Name: NF10611_low_10
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 43549461 - 43549786
Alignment:
| Q |
18 |
gcaaaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatatggattttgtttggttatgaagatatgttttgaaggctg |
117 |
Q |
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| T |
43549461 |
gcaaaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatatggattttgtttggttatgaagatatgttttgaaggctg |
43549560 |
T |
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| Q |
118 |
ccattttataactatgattacgacgnnnnnnntgatttgtaccgtaatcctaaatttccgacaagattaatatgaattttttagcccttatattagtgtg |
217 |
Q |
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| T |
43549561 |
ccattttataactatgattacgacgaaaaaaatgatttgtaccgtaatcctaaatttccgacaagattaatatgaattttttagcccttatattagtgtg |
43549660 |
T |
|
| Q |
218 |
tagtatttaacctagacttttccttctgtgttttatttcctgatcaggcattttatttcaaatacattttgcaagcatgcctacaaacttccgtacccat |
317 |
Q |
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| T |
43549661 |
tagtatttaacctagacttttccttctgtgttttatttcctgatcaggcattttatttcaaatacattttgcaagcatgcctacaaacttccgtacccat |
43549760 |
T |
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| Q |
318 |
tttctggcttttctttggacgtagat |
343 |
Q |
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| T |
43549761 |
tttctggcttttctttggacgtagat |
43549786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 17749338 - 17749486
Alignment:
| Q |
183 |
attaatatgaattttttagcccttata--ttagtgtgtagtatttaacctagacttttccttctgtgttttatttcctgatcaggcattttatttcaaat |
280 |
Q |
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| T |
17749338 |
attaatatgaattttttagcccttatatattagtgtgtagtatttaacctagacttttccttttgtgttttatttcatgatcatgcattttatttcaaat |
17749437 |
T |
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| Q |
281 |
acattttgcaagcatgcctacaaacttccgtacccattttctggctttt |
329 |
Q |
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| T |
17749438 |
acattttgcaagcatgcctataaacttccgtgcccatattgtggctttt |
17749486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 29369456 - 29369576
Alignment:
| Q |
21 |
aaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatat-ggattttgtttggttatgaagatatgttttgaaggctgcc |
119 |
Q |
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| T |
29369456 |
aaggaccttgtatgcagactacgttgtggagagtttgaggcggtagtattgatgcatatgggattttgtttggtcttgaag--atgttttgaagactgca |
29369553 |
T |
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| Q |
120 |
attttataactatgattacgacg |
142 |
Q |
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| T |
29369554 |
attttataactatgattacgacg |
29369576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 50901883 - 50901992
Alignment:
| Q |
21 |
aaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatatggattttgtttggttatgaagatatgttttgaaggctgcca |
120 |
Q |
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||||| |||||||||||||| ||||| ||||| ||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50901883 |
aaggatcttgtatgcggactgcgttgcggagagcttgaggtgttgttgttgatgcatatggattttgtttggtctcgaagatatgttttgaaggctgcca |
50901982 |
T |
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| Q |
121 |
ttttataact |
130 |
Q |
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|||||||||| |
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| T |
50901983 |
ttttataact |
50901992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 50902022 - 50902132
Alignment:
| Q |
196 |
ttttagcccttatattagtgtgtagtatttaacctagacttttccttctgtgttttatttcctgatcaggcattttatttcaaatacattttgcaagcat |
295 |
Q |
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||||||||||||| ||||| | |||||||||||||| || || |||| |||||||||||||||||||| |||||||||||||||| | |||| |||||| |
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| T |
50902022 |
ttttagcccttattttagtttatagtatttaacctaaacatt-ccttttgtgttttatttcctgatcacacattttatttcaaatagaatttgtaagcat |
50902120 |
T |
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| Q |
296 |
gcctacaaactt |
307 |
Q |
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||| |||||||| |
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| T |
50902121 |
gcccacaaactt |
50902132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 43585319 - 43585234
Alignment:
| Q |
211 |
tagtgtgtagtatttaacctagacttttccttctgtgttttatttcctgatcaggcattttatttcaaatacattttgcaagcatgcc |
298 |
Q |
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|||| |||||||||||||||| ||||||| || ||||||||||||| ||| | ||||||||||||||||| |||||||||||||||| |
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| T |
43585319 |
tagtttgtagtatttaacctatacttttcgtt--gtgttttatttcccgattatgcattttatttcaaatagattttgcaagcatgcc |
43585234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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