View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_11 (Length: 345)
Name: NF10611_low_11
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 5343820 - 5343492
Alignment:
| Q |
1 |
atcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaacaatggtagatttgaaatatta |
100 |
Q |
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| T |
5343820 |
atcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaacaatggtagatttgaaatatta |
5343721 |
T |
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| Q |
101 |
acatattcaatatgaacaccctcaacatttttgctcaactcaatagctaccatcatcaataatcaataataaaaaataattaatgcttcctcnnnnnnnn |
200 |
Q |
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| T |
5343720 |
acatattcaatatgaacaccctccacatttttgctcaactcaatagctaccatcatcaataatcaataataaaaaataattaatacttcct-aaaaaaaa |
5343622 |
T |
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| Q |
201 |
ncttatgtatcattaatgg-aagaaaacaaaagtgtttatggtaagaagtaggaaccaaccagaacggatgagaccagtgttgtaagaagcttttcggag |
299 |
Q |
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| T |
5343621 |
aattatgtatcattaatggaaaaaaaagaaaattgtttgtgataagaagtaggaactaaccagaacggatgagaccagtgttgtaagaagcttttcggag |
5343522 |
T |
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| Q |
300 |
agaaccagaaagtgcagcaaccttaattat |
329 |
Q |
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| T |
5343521 |
agaaccagaaagtgcagcaaccttaattat |
5343492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 5351242 - 5351156
Alignment:
| Q |
241 |
gtaagaagtaggaaccaaccagaacggatgagaccagtgttgtaagaagcttttcggagagaaccagaaagtgcagcaaccttaatt |
327 |
Q |
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| T |
5351242 |
gtaagaagtaggaaccaaccagaacggatgagaccggtgttataagaagcttttcgaagagaaccagagatagcaacaaccttaatt |
5351156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 5351597 - 5351452
Alignment:
| Q |
9 |
caagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaacaatggtagatttgaaatattaacatattc |
108 |
Q |
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| T |
5351597 |
caagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacattggtaaagttgaaatatcaatgtactc |
5351498 |
T |
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| Q |
109 |
aatatgaacaccctca---acatttttgctcaactcaatagctacc |
151 |
Q |
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| T |
5351497 |
aatatcaacaccctcaaccacatttttgctcagctcaatcgctacc |
5351452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5325515 - 5325594
Alignment:
| Q |
1 |
atcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
80 |
Q |
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| T |
5325515 |
atcagcttcaagaatcttatgacgaaatgcttcaacttcagcaggaaaagttccttctttctcaagatcagtgttcaaca |
5325594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 5339489 - 5339556
Alignment:
| Q |
31 |
ttcaacttcaactggataagtcccttctttctcaagatcagtgttcaacaatggtagatttgaaatat |
98 |
Q |
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| T |
5339489 |
ttcaacttcaagaggaaaagtcccttcttcctcaagatcagtgttcaacaatggcaaattcgaaatat |
5339556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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