View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10611_low_12 (Length: 338)

Name: NF10611_low_12
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10611_low_12
NF10611_low_12
[»] chr5 (3 HSPs)
chr5 (21-182)||(9638638-9638798)
chr5 (234-334)||(9638483-9638583)
chr5 (260-302)||(9638381-9638423)
[»] chr1 (3 HSPs)
chr1 (67-182)||(1626663-1626776)
chr1 (260-302)||(15569581-15569623)
chr1 (24-182)||(52456365-52456523)
[»] chr2 (2 HSPs)
chr2 (24-161)||(3803998-3804138)
chr2 (59-129)||(13715777-13715847)
[»] chr7 (1 HSPs)
chr7 (59-130)||(22754434-22754505)
[»] chr4 (1 HSPs)
chr4 (76-145)||(27955143-27955212)
[»] chr3 (1 HSPs)
chr3 (59-161)||(23035269-23035372)
[»] scaffold0855 (1 HSPs)
scaffold0855 (77-182)||(1800-1900)
[»] scaffold0847 (1 HSPs)
scaffold0847 (77-182)||(1965-2065)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 9638798 - 9638638
Alignment:
Q  21 cctgttacttacattaatgatgttggtcatgatcatacatgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9638798 cctgttacttacattaatgatgttggtcatgatcatacctgtaatatggtagataatgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 9638699  T
Q  121 tattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaacaa 182  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9638698 tattctaattttgtaaatacctcatcttaaagattattc-aaacatacatcaaatcaaacaa 9638638  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 9638583 - 9638483
Alignment:
Q  234 atgtcttcttaagtaatagttcacaaatttcacttgtgtaacattgtggtgggaatatcacatgacatttgaaacatagattttttgttttcttctctct 333  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||    
T  9638583 atgtcttcttaagtagtagttcacaaatttcacttgtgtaacattgtggtggaaatatcacgtgacatttgacacatagattttttattttcttctctct 9638484  T
Q  334 c 334  Q
    |    
T  9638483 c 9638483  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 9638381 - 9638423
Alignment:
Q  260 atttcacttgtgtaacattgtggtgggaatatcacatgacatt 302  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  9638381 atttcacttgtgtgacattgtggtgggaatgtcacatgacatt 9638423  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 1626663 - 1626776
Alignment:
Q  67 tggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacat 166  Q
    |||||||||||||||||| |||||||||||||||||||| | ||| ||||||||| |||||||| | ||||||   |||  |||||| ||||||| |||     
T  1626663 tggtagatagtgggtcaacaatgtggcaagcaatgttagcggagg-tgcttagttgttctaagtctataaatataccattgtaaaga-tattcaacacac 1626760  T
Q  167 acatcaaatcaaacaa 182  Q
    ||||||||||||||||    
T  1626761 acatcaaatcaaacaa 1626776  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 15569581 - 15569623
Alignment:
Q  260 atttcacttgtgtaacattgtggtgggaatatcacatgacatt 302  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  15569581 atttcacttgtgtgacattgtggtgggaatgtcacatgacatt 15569623  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 52456365 - 52456523
Alignment:
Q  24 gttacttacattaatgatgttggtcatgatcatacatg---taatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 120  Q
    |||||||| |||| ||||||| | ||||||| ||||||   ||||||| ||||||||   |||||||  ||| || |||||||||  || | ||||||||    
T  52456365 gttacttatattagtgatgttagccatgatcttacatgatataatatgatagatagtcattcaaaaacatggtaaacaatgttagcataagttgcttagt 52456464  T
Q  121 tattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaacaa 182  Q
    |||||||||| | ||| || ||||||  |||||||||||  || |||||||| |||||||||    
T  52456465 tattctaagtgtataacta-ctcatcgcaaagattattc--aagatacatcacatcaaacaa 52456523  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 3803998 - 3804138
Alignment:
Q  24 gttacttacattaatgatgttggtcatgatcatacatgt---aatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 120  Q
    |||||||| |||| | ||||| ||||||||||| |||||   |||||||||| |||||| |||||| ||||||| | ||| || | | ||| ||||||||    
T  3803998 gttacttatattagtaatgttagtcatgatcattcatgttgaaatatggtagttagtggatcaaaattgtggcaggaaatttttggggaggttgcttagt 3804097  T
Q  121 tattctaagtttgtaaatacctcatcttaaagattattcaa 161  Q
    || ||||||| | ||||||||||||   |||||||||||||    
T  3804098 taatctaagtctataaatacctcattggaaagattattcaa 3804138  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 13715847 - 13715777
Alignment:
Q  59 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaag 129  Q
    ||||||||||||||| |||| | |||||| || |||| ||||||||| ||| | | |||||||||||||||    
T  13715847 atgtaatatggtagaaagtgaggcaaaaacgttgcaaacaatgttagtgtacggttcttagttattctaag 13715777  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 22754505 - 22754434
Alignment:
Q  59 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagt 130  Q
    |||||| |||||||||||||||  |||||||||| |||||||||||| ||||| || ||||||||| |||||    
T  22754505 atgtaaaatggtagatagtgggcgaaaaatgtggaaagcaatgttagtgtaggttgtttagttattataagt 22754434  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 27955212 - 27955143
Alignment:
Q  76 gtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat 145  Q
    ||||||||||||||||| || ||||||||| ||||| | |||||||| ||||||| | ||||||||||||    
T  27955212 gtgggtcaaaaatgtggaaaacaatgttagtgtaggttccttagttactctaagtgtataaatacctcat 27955143  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 23035372 - 23035269
Alignment:
Q  59 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat-cttaaagattat 157  Q
    |||||||||||||||||||||| || ||| ||  ||||||| ||||  ||||| ||||| ||||||| |||| | ||||||| ||||  | |||||||||    
T  23035372 atgtaatatggtagatagtgggccataaacgttacaagcaacgttaatgtaggttgcttggttattcgaagtctataaatacgtcatggtaaaagattat 23035273  T
Q  158 tcaa 161  Q
    ||||    
T  23035272 tcaa 23035269  T

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Target: scaffold0855 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 1800 - 1900
Alignment:
Q  77 tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc 176  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||  | |||||||| |||  |||||| |||||  |||| ||||||||||    
T  1800 tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc 1894  T
Q  177 aaacaa 182  Q
    ||||||    
T  1895 aaacaa 1900  T

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Target: scaffold0847 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 1965 - 2065
Alignment:
Q  77 tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc 176  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||  | |||||||| |||  |||||| |||||  |||| ||||||||||    
T  1965 tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc 2059  T
Q  177 aaacaa 182  Q
    ||||||    
T  2060 aaacaa 2065  T

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