View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10611_low_14 (Length: 323)
Name: NF10611_low_14
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 40146649 - 40146942
Alignment:
| Q |
17 |
aacacttgtgtaggtgacatacttggatgcacctacgttcctcccctcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcac |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40146649 |
aacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcac |
40146748 |
T |
|
| Q |
117 |
aaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctttt |
216 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40146749 |
aaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctttt |
40146848 |
T |
|
| Q |
217 |
cattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacat |
310 |
Q |
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| T |
40146849 |
cattaattcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacat |
40146942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 8103335 - 8103042
Alignment:
| Q |
17 |
aacacttgtgtaggtgacatacttggatgcacctacgttcctcccctcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||| |||| | | | || | ||||| |||||||||||||||| |
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|
| T |
8103335 |
aacacttgtgtaggtgacatacttggatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatcac |
8103236 |
T |
|
| Q |
117 |
aaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctttt |
216 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||| ||| || ||||| ||| |
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| T |
8103235 |
aaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtattt |
8103136 |
T |
|
| Q |
217 |
cattaactcatgggcgaaaatctcgc---gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaa |
307 |
Q |
| |
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|||||| || ||||| ||||||| | ||||||||||||||||| |||||||||| ||| || ||||||||||||||| |||||||||| |
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| T |
8103135 |
cattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaa |
8103042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 7655475 - 7655633
Alignment:
| Q |
92 |
gttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttg |
191 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| | ||| ||||| || ||| ||||||||||| |||||||||| |||| || ||||||| || | |
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|
| T |
7655475 |
gttagaaactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtag |
7655574 |
T |
|
| Q |
192 |
ttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgt |
250 |
Q |
| |
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||||||| ||||||| |||| |||||| || || ||||| |||| || ||||||||| |
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|
| T |
7655575 |
ctgacggacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt |
7655633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 7629396 - 7629245
Alignment:
| Q |
101 |
tacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggag |
200 |
Q |
| |
|
||||||||||| ||| |||||||||| | ||| ||||| || ||| |||||||||| |||| ||||||| ||||| ||||||| |||||||||||| |
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| T |
7629396 |
tacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaa |
7629297 |
T |
|
| Q |
201 |
agtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg |
252 |
Q |
| |
|
||||| |||| |||||| || |||||||| ||||||| ||| ||||||| |
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|
| T |
7629296 |
agtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttg |
7629245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 7637839 - 7637632
Alignment:
| Q |
104 |
gaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagt |
203 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||| || ||| |||||||||| | |||||||||| |||||||||||| || ||||||||| ||| |
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| T |
7637839 |
gaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagt |
7637740 |
T |
|
| Q |
204 |
ccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtgg |
300 |
Q |
| |
|
|| |||| |||||| || || ||||| ||||||| ||| ||||||| || ||||| |||| |||| | ||| ||||| ||||||||||||| ||| |
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|
| T |
7637739 |
ccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatgg |
7637640 |
T |
|
| Q |
301 |
tattcaac |
308 |
Q |
| |
|
| |||||| |
|
|
| T |
7637639 |
tgttcaac |
7637632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 306
Target Start/End: Complemental strand, 6501337 - 6501078
Alignment:
| Q |
46 |
cacctacgttcctcccctcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagag |
145 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||| || | | | | || ||| |||||||||| |||| |||||||| | | ||||||||||||||| |
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|
| T |
6501337 |
cacctaccttcctcttatcgtccattcattttttcctttcaacggggctagaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagag |
6501238 |
T |
|
| Q |
146 |
ttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtg |
245 |
Q |
| |
|
||||||| ||| |||| ||||| |||| ||| ||||||| ||| || ||| |||||| |||| ||| || | || ||||| |||| || |||| |
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|
| T |
6501237 |
ttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtg |
6501138 |
T |
|
| Q |
246 |
gttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattca |
306 |
Q |
| |
|
||||||| |||||| ||||||||||| | | |||||||||| |||||||| || |||||| |
|
|
| T |
6501137 |
gttgttgtaatcaaatatccaaactcccatcactagaacgtt-gtttccaaatgatattca |
6501078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 11969713 - 11969553
Alignment:
| Q |
71 |
tcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtt |
170 |
Q |
| |
|
|||||||||||| | | | |||||| ||| || ||||| |||||| | |||||| | | || ||||| |||||||||||||| ||| |||||||||| | |
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|
| T |
11969713 |
tcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggct |
11969614 |
T |
|
| Q |
171 |
ttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggc |
231 |
Q |
| |
|
||||| | || |||| | |||||||||| |||||| |||| |||||| || |||||||| |
|
|
| T |
11969613 |
ttacaatcaatcatgtcgccgttgacggagtgtccacttggcatttcatcaattcatgggc |
11969553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 252
Target Start/End: Original strand, 8934449 - 8934655
Alignment:
| Q |
46 |
cacctacgttcctcccctcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagag |
145 |
Q |
| |
|
||||||||| ||||| | || |||||||||||| | |||||| | |||| || ||||||||||||||| |||||||||| | || ||||| || ||| |
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|
| T |
8934449 |
cacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaacggag |
8934548 |
T |
|
| Q |
146 |
ttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtg |
245 |
Q |
| |
|
||| ||||||| | |||||||||| |||||||||| || || |||||||| |||| |||| |||||| || |||||||| ||||||| ||| |
|
|
| T |
8934549 |
ttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcatgggctgaaatctcacgta |
8934648 |
T |
|
| Q |
246 |
gttgttg |
252 |
Q |
| |
|
||||||| |
|
|
| T |
8934649 |
gttgttg |
8934655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 8935412 - 8935548
Alignment:
| Q |
68 |
gattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattg |
167 |
Q |
| |
|
|||||||||||| | |||||| |||| || ||||||||||||||| |||||||||| | || ||||| || |||||| ||||||| | ||||||| |
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|
| T |
8935412 |
gattcattttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattg |
8935511 |
T |
|
| Q |
168 |
gttttacatttaaccatgcggttgttgacggagagtc |
204 |
Q |
| |
|
||| |||||||||| || || |||||||| |||| |
|
|
| T |
8935512 |
gttgctcatttaaccacgctgtcattgacggaaagtc |
8935548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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