View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10611_low_15 (Length: 320)
Name: NF10611_low_15
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 4235982 - 4236276
Alignment:
| Q |
18 |
cccaacaatgtagctcatgaggaatgctacaatgcttgttatacaaattatgaccatatgcatgttggtcatagtagggaaagtactccacaactgatta |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4235982 |
cccaacaatgtagctcatgtggaatgctacaatgcttgttatacaaattatgacaatatgcatgttggtcatagtagggaaagcactccacaactgatta |
4236081 |
T |
|
| Q |
118 |
taccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatcatgcaaacaaagtaagagtgctggagagaaagtaacattggaagag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236082 |
taccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatcatgcaaacaaagtaagagtgctggagagaaagtaacattggaagag |
4236181 |
T |
|
| Q |
218 |
cttcttggtagaccaacagtgattcttttgctaattttactaatcagataaccatttacatttatgtattatatggtggatttattgatgtccat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4236182 |
cttcttggtagaccaacagtgattcttttactaattttactaatcagataaccatttacatttatgtattatatggtggatttatttatgtccat |
4236276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 74 - 283
Target Start/End: Complemental strand, 6588984 - 6588785
Alignment:
| Q |
74 |
tatgcatgttggtcatagtagggaaagtactccacaactgattataccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatcat |
173 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
6588984 |
tatgcatgttggtcatagtaggga--------cacaaataattattccaaacatggctgtccaaggtgatggaactattattcgcttatcaatggatcat |
6588893 |
T |
|
| Q |
174 |
gcaaacaaagtaagagtgctggagagaaagtaacattggaagagcttcttggtagaccaacagtgattcttttgctaattttactaatcagataaccatt |
273 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||| | || |||| ||||||||||||||| |
|
|
| T |
6588892 |
gcaaacaaagtaagagtaccggagagaaagtagcattgaaagagtttcttggtagaacaacagtgattcttttaccaa--ttacaaatcagataaccatt |
6588795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University