View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_16 (Length: 317)
Name: NF10611_low_16
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41327185 - 41327306
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
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||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
41327185 |
gggttctgaaggagattcgatggagaggtagaagcggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaggggatgaaggcaaagttaa |
41327284 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41327285 |
taaaaatgtgaaatgggattgt |
41327306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42313539 - 42313658
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42313539 |
gggttctgaaggagatttgatggag--gcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaggggatgaaggctaagttaa |
42313636 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
42313637 |
taaaaatgtgaaatgggattgt |
42313658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 42313739 - 42313845
Alignment:
| Q |
197 |
gtttgatggaaaagtgtagttcacaacatgttaccaatacccatgctttctttttccaatgttgaagatggtggaatgctttgttgggaatatgcgggta |
296 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
42313739 |
gtttgatggaaaagtgtagttcacgacatgttaccaatacccatgctttcttgttccaatgttgaagacggtggaatgctttgttgggaatatgccggta |
42313838 |
T |
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| Q |
297 |
attaatg |
303 |
Q |
| |
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||||||| |
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| T |
42313839 |
attaatg |
42313845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 20910488 - 20910594
Alignment:
| Q |
197 |
gtttgatggaaaagtgtagttcacaacatgttaccaatacccatgctttctttttccaatgttgaagatggtggaatgctttgttgggaatatgcgggta |
296 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||| |
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| T |
20910488 |
gtttgatggaaaagtgtagttcataacatgttaccaatacccatgctttcttgttccaatgttgaagacggtggaatgctttgttggaaatatgccggta |
20910587 |
T |
|
| Q |
297 |
attaatg |
303 |
Q |
| |
|
||||||| |
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| T |
20910588 |
attaatg |
20910594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 20924936 - 20925042
Alignment:
| Q |
197 |
gtttgatggaaaagtgtagttcacaacatgttaccaatacccatgctttctttttccaatgttgaagatggtggaatgctttgttgggaatatgcgggta |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||| |
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| T |
20924936 |
gtttgatggaaaagtgtagttcataacatgttaccaatacccatgctttcttgttccaatgttgaagacggtggaatgctttgttggaaatatgccggta |
20925035 |
T |
|
| Q |
297 |
attaatg |
303 |
Q |
| |
|
||||||| |
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|
| T |
20925036 |
attaatg |
20925042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20910293 - 20910413
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| |
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| T |
20910293 |
gggttctgaaggagattcgatggagaggtagaa-cggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaagggatgaaggaaaagataa |
20910391 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
20910392 |
taaaaatgtgaaatgggattgt |
20910413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20924741 - 20924861
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
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||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| |
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| T |
20924741 |
gggttctgaaggagattcgatggagaggtagaa-cggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaagggatgaaggaaaagataa |
20924839 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
20924840 |
taaaaatgtgaaatgggattgt |
20924861 |
T |
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