View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_19 (Length: 298)
Name: NF10611_low_19
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_19 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 4194643 - 4194787
Alignment:
| Q |
17 |
aatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaacttttaccttctctcccataacttgcttcagaattgataaagcaat |
116 |
Q |
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| T |
4194643 |
aatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaacttttaccttctctcccattacttgcttcagaattgataaagcaat |
4194742 |
T |
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| Q |
117 |
agtctcagctttttcaagagttaagtcctgcacaacataataaat |
161 |
Q |
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| T |
4194743 |
agtctcagctttttcaagagttaagtcctgcacaacataataaat |
4194787 |
T |
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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 4196457 - 4196541
Alignment:
| Q |
161 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
245 |
Q |
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| T |
4196457 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
4196541 |
T |
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Target: scaffold0082 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 3877 - 3793
Alignment:
| Q |
161 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
245 |
Q |
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| T |
3877 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
3793 |
T |
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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 50772588 - 50772454
Alignment:
| Q |
17 |
aatttattctcagcaaggggg-caaacaacttgaagtcc-atgcatatgaatttaacttttaccttctctcccataacttgcttcagaattgataaagca |
114 |
Q |
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| T |
50772588 |
aatttattctcagtagggggggcaaacaactggaagtaagatgcatttggttttaacttt-accttctcttccataacttgcttcaggattgataaagca |
50772490 |
T |
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| Q |
115 |
atagtctcagctttttcaagagttaagtcctgcaca |
150 |
Q |
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| T |
50772489 |
atagtctcagcttcttgaagagttaagtcctgcaca |
50772454 |
T |
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