View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_2 (Length: 496)
Name: NF10611_low_2
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 37190790 - 37190356
Alignment:
| Q |
17 |
agaaacctcaaattctcatcaatttgggcaacttatttgactaaaacccaacccc-aatcgacacttaatgcgaacaacaagacgttgacacctaacttc |
115 |
Q |
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| T |
37190790 |
agaaacctcaaattctcatcaatttgggcaacttatttgactaaaacccaacccccaatcgacacttaatgcgaacaacaagacattgacacctaacttc |
37190691 |
T |
|
| Q |
116 |
aacaatgacaactaccttaaaaaatgacacctaccatcgaatttgcctatatcaagcaaaacacacatagccataagatga---accattggattttgtg |
212 |
Q |
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| T |
37190690 |
aacaatgacaactaccttaaaaaatgacacctaccatcgaatttgcctatatcaagcaaaacaca-atagccataagatgatgaaccattggattttgtg |
37190592 |
T |
|
| Q |
213 |
aatcgtaatctcatagcaaaccacataggcacatatggcaattagttgctccaacatagatactctgccagaggattgtgtttcaaaaattctaacgtac |
312 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37190591 |
aatcgtaatctcatagcaaactacataggcacatatggcaattagttgctccaacatagatactctgccggaggattgtgtttcaaaaattctaacgtac |
37190492 |
T |
|
| Q |
313 |
acatctccacttgatgcatgtaatttctcaatggtatcctcaactttgcattcagcagctaactccgacacactttggagaagcttcttaccctctgact |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37190491 |
acatctccacttgatgcatgtaatttctcaatggtatcctcaactttgcattcagcagctaactctgacacactttggagaagcttcttaccctctgact |
37190392 |
T |
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| Q |
413 |
atgaagacatcatctcaagaaccctcaatcccctca |
448 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37190391 |
atgaagacatcatctcaagaaccctcaatcccctca |
37190356 |
T |
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