View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_21 (Length: 291)
Name: NF10611_low_21
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 38937835 - 38937563
Alignment:
| Q |
18 |
ttcagctcatggggaaattccttcttccataggtcaactaaaggagttggtgcatcttgatctcagtgctaactttttgaactctaaagttccttctgag |
117 |
Q |
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| T |
38937835 |
ttcagctcatggggaaattccttcttccataggtcaactaaaggagttagtgcatcttgatctcagtgctaactttttgaactctaaagttccttctgag |
38937736 |
T |
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| Q |
118 |
cttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctttgtcattagcaaatttgactaaactatcagaac |
217 |
Q |
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| T |
38937735 |
cttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctttgtcattagcaaatttgactaaactatcagaac |
38937636 |
T |
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| Q |
218 |
taggattatcggataattctttttctggtcaaatttcagcttcattgatctctaattggactgagttaacttc |
290 |
Q |
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| T |
38937635 |
taggattatcggataattctttttctggtcaaatttcagcttcattggtatctaattggaccaagttaacttc |
38937563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 39305177 - 39305389
Alignment:
| Q |
78 |
tctcagtgctaactttttgaactctaaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttct |
177 |
Q |
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| T |
39305177 |
tctcagtgctaactttttgaactctaaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttct |
39305276 |
T |
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| Q |
178 |
ttgcctttgtcattagcaaatttgactaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattgatctctaattgga |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
39305277 |
ttgcctttgtcattagcaaatttgactaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattggtatctaattgga |
39305376 |
T |
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| Q |
278 |
ctgagttaacttc |
290 |
Q |
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| T |
39305377 |
ccaagttaacttc |
39305389 |
T |
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