View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10611_low_24 (Length: 269)
Name: NF10611_low_24
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 6307945 - 6308182
Alignment:
| Q |
10 |
gagagagaagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataatttcttgggtaacctcttctctgaaaacctca |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307945 |
gagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataatttcttgggtaacctcttctctgaaaacctca |
6308044 |
T |
|
| Q |
110 |
acaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttaccctttgatttccattagaggccaggctgactt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308045 |
acaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttaccctttgatttccattagaggccaggctgactt |
6308144 |
T |
|
| Q |
210 |
tattatcaactaaatcacaagaaaccattaccggttatg |
248 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
6308145 |
tattatcaa-taaatcacaaaaaaccattaccggttatg |
6308182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University