View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_25 (Length: 253)
Name: NF10611_low_25
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_25 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 446564 - 446802
Alignment:
| Q |
15 |
atgaacaatcttattccagcaatcacatttgtaatagcagcctttgcagggtaaatttctaactacactcaacctatttttgttgccccatcaaattaat |
114 |
Q |
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| T |
446564 |
atgaacaatcttattccagcaatcacatttgtaatagcagcctttgcagggtaaatttctaactacactcaacctatttttgttgccccatcaaattaat |
446663 |
T |
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| Q |
115 |
taatatgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagc |
214 |
Q |
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| T |
446664 |
taatatgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagc |
446763 |
T |
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| Q |
215 |
aatgtccatcgcattgttgaagggtccaaaacttttaaa |
253 |
Q |
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| T |
446764 |
aatgtccatcgcattgttaaagggtccaaaacttttaaa |
446802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 467679 - 467806
Alignment:
| Q |
120 |
tgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgt |
219 |
Q |
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| T |
467679 |
tgaaattgattatattacagaatggaaaaagtgaatattcgaagtataagaactatagccaaaatagtggggacaattatatgtgtaagtggagcagtgt |
467778 |
T |
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| Q |
220 |
ccatcgcattgttgaagggtccaaaact |
247 |
Q |
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| T |
467779 |
caattgcattgttgaagggtccaaaact |
467806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 474723 - 474837
Alignment:
| Q |
130 |
tatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccatcgcatt |
229 |
Q |
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| T |
474723 |
tatattacagaatggagaaagtcaacattcgaagtttgagaactatagccaaaatagtagggacattaatatgtgtttgtggagcattgtctatagcatt |
474822 |
T |
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| Q |
230 |
gttgaagggtccaaa |
244 |
Q |
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| T |
474823 |
gttgaagggtccaaa |
474837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 480068 - 480184
Alignment:
| Q |
128 |
attatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccatcgca |
227 |
Q |
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| T |
480068 |
attatattacagaatggagaaagtaaatattcgaagtatgagaactatagccaaaatagtggggacagtgatatgtataagtggagcagtatctattgca |
480167 |
T |
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| Q |
228 |
ttgttgaagggtccaaa |
244 |
Q |
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| T |
480168 |
ttgttgaagggtccaaa |
480184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 455399 - 455495
Alignment:
| Q |
124 |
attgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtc |
220 |
Q |
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| T |
455399 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
455495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 479947 - 479987
Alignment:
| Q |
28 |
ttccagcaatcacatttgtaatagcagcctttgcagggtaa |
68 |
Q |
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| T |
479947 |
ttccagcagtcacatttgtaatagcagcctttgtagggtaa |
479987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 27491647 - 27491537
Alignment:
| Q |
134 |
ttacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccatcgcattgttg |
233 |
Q |
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||||||||||||| || | |||||| ||||| |||||||||||||||||||| | |||||||| ||| |||| |||||||| ||| ||| ||| | ||| |
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| T |
27491647 |
ttacagaatggagcaagtgaatattagaagtttgagaactatagccaaaataataggaacaattataggtgtaagtggagcagtgttcattgcactattg |
27491548 |
T |
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| Q |
234 |
aagggtccaaa |
244 |
Q |
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| T |
27491547 |
aagggtccaaa |
27491537 |
T |
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