View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_27 (Length: 251)
Name: NF10611_low_27
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 5728559 - 5728774
Alignment:
| Q |
10 |
tcaacatatttcattcattcaaccgggatacaaatctatctatatgcccttttcttcattatggatattaaaaactaaaaataagttaagggaccgaaca |
109 |
Q |
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| T |
5728559 |
tcaacatatttcattcattcaacctggatacaaatctatgtatatgcccttttcttcattatggatattaaaaactaaaaataagttaagggaccgaata |
5728658 |
T |
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| Q |
110 |
atgtatcacatcgaattaaaagccagtcccttgacnnnnnnnctcttcttttcaattatcgcactatatcaacttcaattctcaccctaatgcccataag |
209 |
Q |
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| T |
5728659 |
atgtatcacatcgaattaaaaatcagtcgcttgac-ttttttctcttcttttcaattatcgc----------------ttctcaccctaatgcccataag |
5728741 |
T |
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| Q |
210 |
agtttttattctacccatcacatgtacctttgc |
242 |
Q |
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| T |
5728742 |
agtttttattctacccatcacatgtacctttgc |
5728774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 29424690 - 29424727
Alignment:
| Q |
78 |
taaaaactaaaaataagttaagggaccgaacaatgtat |
115 |
Q |
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| T |
29424690 |
taaaaaccaaaaataagttaagggaccaaacaatgtat |
29424727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 36756104 - 36756076
Alignment:
| Q |
76 |
attaaaaactaaaaataagttaagggacc |
104 |
Q |
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| T |
36756104 |
attaaaaactaaaaataagttaagggacc |
36756076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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