View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_31 (Length: 245)
Name: NF10611_low_31
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_31 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 32595495 - 32595718
Alignment:
| Q |
21 |
caagagactcttccaagttgaggattcatttgtcatttctgttaacaaaatcaaaagtaccaaattaacatgtagttatcatccactgaaatacaaattt |
120 |
Q |
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| T |
32595495 |
caagagactcttc-aagttgaggattcatttgtcatttctgttaacaaaatcaaaagtaccaaattaacatgtagttatcatccactgaaatacaaattt |
32595593 |
T |
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| Q |
121 |
agaggcaaagagatgttacaagaacagaagatagggaacaaggacaatgagaattatagaaaaaatgcaacctgtgaaatctcaactgaattttgataag |
220 |
Q |
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| T |
32595594 |
agaggcaaagagatgttacaagaacagaagatagggaacaaggacaatgagaattagagaaaaagtgcaacctgtgaaatctcaactgaattttgataag |
32595693 |
T |
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| Q |
221 |
gataatccttttggagagcattgtt |
245 |
Q |
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|||| |||||||||||||||||||| |
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| T |
32595694 |
gatagtccttttggagagcattgtt |
32595718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 46 - 226
Target Start/End: Original strand, 32600124 - 32600304
Alignment:
| Q |
46 |
tcatttgtcatttctgttaacaaaatcaaaagtaccaaattaacatgtagttatcatccactgaaatacaaatttagaggcaaagagatgttacaagaac |
145 |
Q |
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||||||| ||||||| ||||||| ||| |||||||||| ||| |||| |||||||||||||| | |||||| |||||||||||||||| ||||||| | |
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| T |
32600124 |
tcatttgccatttctattaacaagatccaaagtaccaagttagcatgaagttatcatccactaagatacaagtttagaggcaaagagaaaatacaagacc |
32600223 |
T |
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| Q |
146 |
agaagatagggaacaaggacaatgagaattatagaaaaaatgcaacctgtgaaatctcaactgaattttgataaggataat |
226 |
Q |
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| T |
32600224 |
acaagatagggaacaaacacaatgtgacttagataaaaagtgcaacctgtgaaatctcaactgaatttagctaaggataat |
32600304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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