View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_35 (Length: 238)
Name: NF10611_low_35
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5728209 - 5727987
Alignment:
| Q |
1 |
ttctaagaaaaaattattatagtggaatcatggccaataataaggacaaggcaaagatagtggaactattcgttgcttgaaggccctttattggggtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5728209 |
ttctaagaaaaaattattatagtggaatcatggccaataataaggacaaggcaaagatagtggaaccattcgttgcttgaaggccctttattggggtttt |
5728110 |
T |
|
| Q |
101 |
tccggtgctatgttgctacagtgtcatctcattgattttttacacagaccagatagaaactcaacccatcttttgaaaaatggaataataatctaattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5728109 |
tccggtgctatgttgctacagtgtcatctcattgattttttacacagaccagatagaaactcaacccatcttttgaaaaatggaataataatctaattgt |
5728010 |
T |
|
| Q |
201 |
atctttagtaaaattgtactatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5728009 |
atctttagtaaaattgtactatt |
5727987 |
T |
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