View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_36 (Length: 237)
Name: NF10611_low_36
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41918204 - 41917984
Alignment:
| Q |
1 |
taactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataaacctttgaatctttgaaatattccaaaa |
100 |
Q |
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| T |
41918204 |
taactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataaacctttgaatctttgaaatattccaaaa |
41918105 |
T |
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| Q |
101 |
atgggaaagagatggaatctccatcatcgacaaataatggcttttgacactcaggaatcttggcagtctttctaacataactttttctctgcttcggagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
41918104 |
atgggaaagagatggaatctccatcatcgacaaataatggcttttgacactcaggaatcttggcagtctttctaacataacttttcctctgtttcggagt |
41918005 |
T |
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| Q |
201 |
tgaaggttttggagtgttgtt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41918004 |
tgaaggttttggagtgttgtt |
41917984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 41917973 - 41917917
Alignment:
| Q |
160 |
ttggcagtctttctaacataactttttctctgcttcggagttgaaggttttggagtg |
216 |
Q |
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| T |
41917973 |
ttggcggtctttctaacataacttttcctctgcttcggagttgatggttttggagtg |
41917917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1687080 - 1686863
Alignment:
| Q |
1 |
taactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataaacctttgaatctttgaaatattccaaaa |
100 |
Q |
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|||||||||| ||||||||| |||| ||||| |||||||||| |||||| | |||||||||| || | || ||||| || ||||||| | ||||| |
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| T |
1687080 |
taactttgtagtgaattgtattcgatagcagatacattagttatggttgaactctcaaatccactcttctcaatctttgtattgttgaaatttaacaaaa |
1686981 |
T |
|
| Q |
101 |
atgggaaagagatggaatctccatcatcgacaaataatggcttttgacactcaggaatcttggcagtctttctaacataactttttctctgcttcggagt |
200 |
Q |
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|||| ||||||||||||| ||||||||| ||||||||||| |||||||||| | |||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
1686980 |
atggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcacaagtcttagcactctttctaacataacttttcctctgcttcggagt |
1686881 |
T |
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| Q |
201 |
tgaaggttttggagtgtt |
218 |
Q |
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| |||||| |||||||| |
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| T |
1686880 |
tacaggtttgggagtgtt |
1686863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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