View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_37 (Length: 231)
Name: NF10611_low_37
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_37 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 32596028 - 32595798
Alignment:
| Q |
1 |
atgtcagtggttgacttaatcgtaaaagaaaaagctcaacaagcagaagcggcaaggnnnnnnnttgtagagagagacacaacgcaagttgcagccagga |
100 |
Q |
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| T |
32596028 |
atgtcagtggttgacttaattgtaaaagaaaaagctcaacaagcagaagcggcaaggaaaaaaattgtagagagagacacaacgcaagttgcagccagga |
32595929 |
T |
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| Q |
101 |
cagcactggagaaggctaaacgtgcattggaaaagtagtggtttacaataactcaataactgtaaagtgaatgtagtagaataattgtgaattgtgtact |
200 |
Q |
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| T |
32595928 |
cagcactggagaaggctaaacgtgcattggaaaagtagtggtttacaataactcaataactgtaaagtgaatgtagtagaataattgtgaactgtgtact |
32595829 |
T |
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| Q |
201 |
tgatctgatccaccacccacccctgcactat |
231 |
Q |
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| T |
32595828 |
tgatctgatccaccacccacccctgcactat |
32595798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 32600597 - 32600431
Alignment:
| Q |
23 |
taaaagaaaaagctcaacaagcagaagcggcaaggnnnnnnnttgtagagagagacacaacgcaagttgcagccaggacagcactggagaaggctaaacg |
122 |
Q |
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||||||| ||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32600597 |
taaaagataaaactcgacaagccgaagcggcaaggaaattttttgtagagagagacacaaagcaagttgcagccaggacagcactggagaaggctaaacg |
32600498 |
T |
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| Q |
123 |
tgcattggaaaagtagtggtttacaataactcaataactgtaaagtgaatgtagtagaataattgtg |
189 |
Q |
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| T |
32600497 |
tgcgttggaaaattagtggctttcaacaactcaataactgtaaagggaatgtagtagaataattgtg |
32600431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 31784213 - 31784076
Alignment:
| Q |
66 |
tgtagagagagacacaacgcaagttgcagccaggacagcactggagaaggctaaacgtgcattggaaaagtagtggtttacaataactcaataactgtaa |
165 |
Q |
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|||| |||||||||||| |||| ||||||||| |||||| ||||||| |||||||||||||||||||| |||| |||||| |||||||||| ||| |
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| T |
31784213 |
tgtacagagagacacaaagcaaattgcagccaagacagcgttggagaatgctaaacgtgcattggaaaattagttccttacaacaactcaataattgtgt |
31784114 |
T |
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| Q |
166 |
agtgaatgtagtagaataattgtgaattgtgtacttga |
203 |
Q |
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| T |
31784113 |
agtgattgtagtagaataatcgtgaattgtgtacttga |
31784076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 32802263 - 32802397
Alignment:
| Q |
66 |
tgtagagagagacacaacgcaagttgcagccaggacagcactggagaaggctaaacgtgcattggaaaagtagtggtttacaataactcaataactgtaa |
165 |
Q |
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||||||||||||||||| |||| || |||||| |||||| ||||||| |||||||||||||||||||| |||| || ||| |||||||||| ||| |
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| T |
32802263 |
tgtagagagagacacaaagcaaatttcagccaagacagcgttggagaatgctaaacgtgcattggaaaattagttcctttcaacaactcaataattgtgt |
32802362 |
T |
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| Q |
166 |
agtgaatgtagtagaataattgtgaattgtgtact |
200 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
32802363 |
agtgaatgaagtagaataattgtgaattgtgtact |
32802397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 37391704 - 37391803
Alignment:
| Q |
65 |
ttgtagagagagacacaacgcaagttgcagccaggacagcactggagaaggctaaacgtgcattggaaaagtagtggtttacaataactcaataactgta |
164 |
Q |
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|||||||||| ||||||| ||| |||||| ||||||| || ||||||| ||| |||||||||||||||| || | |||||| |||||||||| |||| |
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| T |
37391704 |
ttgtagagagcgacacaaatcaaattgcagtcaggacaacattggagaatgcttaacgtgcattggaaaattatttccttacaacaactcaataaatgta |
37391803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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