View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_4 (Length: 485)
Name: NF10611_low_4
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 14878505 - 14878067
Alignment:
| Q |
19 |
acttgaatgataaacgtccaatgaatctaatctatattcaatgcagtggattttcttctgatccattccaaatttcacatattttcctgactcattgata |
118 |
Q |
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| T |
14878505 |
acttgaatgataaacgtccaatgaatctaatctatattcaatgcactggattttcttctgatccattccaaatttcacatattttcgtgactctttgata |
14878406 |
T |
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| Q |
119 |
tacgatcaccgctcccaaaacatgtctgctttataacttttttggcagtgttatcgacatgattttatcagttttcatctcttggttggagcacaatgag |
218 |
Q |
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| T |
14878405 |
tacgatcaccgctcccaaaacatgtcttctttataacttttttggcagtgttatcgacattattttatcagttttcatctcttgtttggagcacaatgag |
14878306 |
T |
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| Q |
219 |
gtgttgttcttctattggtatcattctatagactatttctttcattttgtatacacattacttgttttttataacaacttcttgattgctttcatgcaat |
318 |
Q |
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| T |
14878305 |
gtgttgttcttctattggtatcattctatagactatttctttcattttgtatacacattacttgttttttataacaacttcttgattgctttcatgcaat |
14878206 |
T |
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| Q |
319 |
gattatattagttttggaatattgttgttcacaaatataaacatatataggagagacgattcaccccttaacttttagagcaaagcttcaaggaaacgtg |
418 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14878205 |
gattatattag-tttagaatattgttgttcacaaatataaacatatataggagagacgattcaccccttaacttttagagtaaagcttcaaggaaacgtg |
14878107 |
T |
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| Q |
419 |
taatggaaatacattgtttttatgtctaagaaatcatatc |
458 |
Q |
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| T |
14878106 |
taatggaaatatattgtttttatgtctaagaaatcatatc |
14878067 |
T |
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