View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10611_low_42 (Length: 227)
Name: NF10611_low_42
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17245143 - 17245060
Alignment:
| Q |
1 |
tcttcctccattttcccaattccctccacaactccaggtaagcacccatcacttcttattccttaatttctccaaaatacattc |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17245143 |
tcttcctccattttcccaattccctccacaacccctggtaagtacccatcacttcttattccttaatttctccaaaatacattc |
17245060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 17244995 - 17244931
Alignment:
| Q |
149 |
cagtttcaagagtgcacgttggtcaacccacaaactcgttgaatggtcttcaaatctcgataccct |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
17244995 |
cagtttcaagagtgcacgttggtctacccacaaactcgttgaa-ggtcttcgaatctcgataccct |
17244931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 37236732 - 37236650
Alignment:
| Q |
1 |
tcttcctccattttcccaattccctccacaactccaggtaagcacccatcacttcttattccttaatttctccaaaatacatt |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37236732 |
tcttcctccattttcccaattccctccacaactcctggtaagtacccatcacttcttatttcttaatttctccaaaatacatt |
37236650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34486397 - 34486315
Alignment:
| Q |
1 |
tcttcctccattttcccaattccctccacaactccaggtaagcacccatcacttcttattccttaatttctccaaaatacattc |
84 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34486397 |
tcttcctccattttcccaattcccaccacaaccccaagtaagtacc-atcacttcttcttccttaatttctccaaaatacattc |
34486315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 37236584 - 37236523
Alignment:
| Q |
149 |
cagtttcaagagtgcacgttggtcaacccacaaactcgttgaatggtcttcaaatctcgata |
210 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
37236584 |
cagtttcaaaagtgcacgttggtctacccacaaactcgttgaagggtcttcgaatctcgata |
37236523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 34486250 - 34486185
Alignment:
| Q |
149 |
cagtttcaagagtgcacgttggtcaacccacaaactcgttgaatggtcttcaaatctcgataccct |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||| ||||| |
|
|
| T |
34486250 |
cagtttcaagagtgcacgttggtttacccacaaactcattgaaggggcttcaaatctcgacaccct |
34486185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University