View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_45 (Length: 219)
Name: NF10611_low_45
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 7209169 - 7208991
Alignment:
| Q |
15 |
caaattcttcatcaatcctcatgtgtggagtaagagaaaatcccaaccagttactcatgtttgtctaaagaagaagtttggattttgtttgtctatgcaa |
114 |
Q |
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| T |
7209169 |
caaattcttcatcaatcctcaagtgtggagtgagagaaaatcctaaccagttactcatgtttgtctaaagaagatgtttggattttctttgt-------- |
7209078 |
T |
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| Q |
115 |
gttaggaatgttggagtttgagctcaaagttcaaagctaagaatggtttggttttgaaagagatgaaaattttccatttagtttgtttt |
203 |
Q |
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| T |
7209077 |
--taggaatgttggagtttgagctcaaagttcaaagctaagaatggtttggttttgaaagagatgaaaattttccatttagtttgtttt |
7208991 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 29260278 - 29260224
Alignment:
| Q |
140 |
aaagttcaaagctaagaatggtttggttttgaaagagatgaaaattttccattta |
194 |
Q |
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||||||||||| | ||||||||||||||||||||||| | |||| |||||||||| |
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| T |
29260278 |
aaagttcaaagattagaatggtttggttttgaaagagttaaaaagtttccattta |
29260224 |
T |
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