View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_5 (Length: 478)
Name: NF10611_low_5
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 7560385 - 7560822
Alignment:
| Q |
17 |
aataacatacgccgccatttccaaccatcatcgtcaaaattccatcctaaattgttcaactagcgattgacaccaatcaactcgaagagctatcttaaca |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7560385 |
aataacatacgccgccatttccaaccatcatagtcaaaattccatcctaaattgttcaactagcgattgacaccaatcaactcgaaaagctatcttaaca |
7560484 |
T |
|
| Q |
117 |
acagtatgtctcttatttaaactacttaggtgaatgcgcttaggtgaaattattaaaatgattctaagtaatatgatttttc----tttttaaatatcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7560485 |
acagtatgtctcttatttaaactacttaggtgaa--------------attgttaaaatgattctaagtaatatgattttttattttttttaaatatcaa |
7560570 |
T |
|
| Q |
213 |
gatattttgtttttgctcttaattctctggataatctactgtctgtactaaaccagtctcacagactccaacattattggcaccagatgaaggagttttc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7560571 |
gatattttgtttttgctcttaattctctggataatccactgtatgtactaaaccagtctcacagactccaacattattggcaccagatgaaggagttttc |
7560670 |
T |
|
| Q |
313 |
actgtttaccaagcaaggggttctcaacttccctatccaactaaccccgaaaccaattctccggccagaaccaccagattaccttcccgattccactgca |
412 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7560671 |
gctgtttaccaagcaaggggatttcaacttccctatccaactaaccccgaaaccaattctccggccagaaccaccagattaccttcccgattccactgca |
7560770 |
T |
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| Q |
413 |
tgctcatcccgccttggtaatggtatatacatgtttatttgcattttctctg |
464 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
7560771 |
tgctcatcccgccttggtaatggtatgtacaagtttatttgcattttctctg |
7560822 |
T |
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