View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10611_low_6 (Length: 406)
Name: NF10611_low_6
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 37603060 - 37602686
Alignment:
| Q |
16 |
ggacatcaaccttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctctagagattaatgctctcagaaaccat |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37603060 |
ggacatcaatcttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctctagagattaatgctcttagaaaccag |
37602961 |
T |
|
| Q |
116 |
gaagtgagtctttggtttgtgtcacctaatggtgaagcaacgttgtttaagacccacataacttgttgagctaaggttatatcattgctttccaaagcac |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602960 |
gaagtgagtctttggttagtgtcacctaatggtgaagcaacgttgtttaagacccacataacttgttgagctaaggttatatcattgctttccaaagcac |
37602861 |
T |
|
| Q |
216 |
ttgcacaatgaagtaagagcttttcaatacatgctccatctaagcttccaagacaacctttgagttcttctggttcaggaagaggaggagtgttttggtg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602860 |
ttgcacaatgaagtaagagcttttcaatacatgctccatctaagcttccaagacaacctttgagttcttctggttcaggaagaggaggagtgttttggtg |
37602761 |
T |
|
| Q |
316 |
tgtgttgaaaagtgttggattttgaaaggaaatggatgttgcttttaactcagctttcatgtggacgtgcatggt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602760 |
tgtgttgaaaagtgttggattttgaaaggaaatggatgttgcttttaactcagctttcatgtggacgtgcatggt |
37602686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University