View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_8 (Length: 392)
Name: NF10611_low_8
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 16830710 - 16831060
Alignment:
| Q |
16 |
cagatgcatccaataatatctcgttatcgtgacactttactatgttagtttttaaaatatctcgacaattatctatctacttagtgagatgtaacgggat |
115 |
Q |
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| T |
16830710 |
cagatgcatccaataacatctcgttatcgtgacactttactatgttagtttttaaaatatctcgacaattatcta----cttagtgagatgtaatgggat |
16830805 |
T |
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| Q |
116 |
gcatgtgtgaaagttttttactcaacaattatctacttagttttttaaagtccatggtttgtttaacggtgcatgagttgtgggttaaaaaatttatttt |
215 |
Q |
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| T |
16830806 |
gcatgtgtgaaagttttttactcaacaattatctacttagttttttaatgtccatggtttgttt----gtgcatgagttgtgggttaaaaaatttatttt |
16830901 |
T |
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| Q |
216 |
cacaaagtttctatggttgaaaaatcattacactgtcgtactcatacacttctttatatgcttccaatatgtgtgttgttactatatgtactaataaata |
315 |
Q |
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| T |
16830902 |
cacaaagtttctatggttgaaaaatcattacactgtcgtactcatacacttctttatatgcttccaatatgtgtgttgttactatatgtactaataaata |
16831001 |
T |
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| Q |
316 |
gaaaaacaaactaaataatattttcgttctaaagttaactcattaatgatagtgtggaa |
374 |
Q |
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| T |
16831002 |
gaaaaacaaactaaataatattttcgttctaaagttaactcattaatgatagtgtggaa |
16831060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 374
Target Start/End: Original strand, 16832732 - 16832944
Alignment:
| Q |
168 |
catggtttgtttaacggtgcatgagttgtgggttaaaaaatttattttcacaaagtttctatggttgaa---aaatcattacactgtcgtactcatacac |
264 |
Q |
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| T |
16832732 |
catggtttgtttaacagtgcatgatttgtggtctaaaaaacc-attttcacaaagtttccatgattgaataaaaaacgttacattgtcctactgatagat |
16832830 |
T |
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| Q |
265 |
ttcttt-atatgcttccaatatgtgtgttgttactat---atgtactaataaatagaaaaacaaactaaataatattttcgttctaaagttaactcatta |
360 |
Q |
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| T |
16832831 |
tttttttatatgctttcattatgtgtgttgttattattatatgtactaacaaatagataaacaaactaaataatattttcattcttagtttaactcatta |
16832930 |
T |
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| Q |
361 |
atgatagtgtggaa |
374 |
Q |
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| T |
16832931 |
atgatagtgtggaa |
16832944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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