View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10611_low_9 (Length: 359)
Name: NF10611_low_9
Description: NF10611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10611_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 3544586 - 3544908
Alignment:
| Q |
18 |
catcatttgtaaagaagatatcaaaagcaagaggcatcaagccaagggagtacagagccgtacaagactgcatagaaaacatgggtgacagtttggacag |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544586 |
catcgtttgtaaagaagatatcaaaagcaagaggcatcaagccaagggagtacagagccgtacaagactgcatagaaaacatgggtgacagtttggacag |
3544685 |
T |
|
| Q |
118 |
tcttagccaatcggttagggagttaggcagtattggtcatgctgttggagaggactttgtgtggcacatgaccaacgtgcagacttgggtcagtgctgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544686 |
tcttagccaatcggttagggagttaggcagtattggtcatgctgttggagaggactttgtgtggcacatgaccaacgtgcagacttgggtcagtgctgca |
3544785 |
T |
|
| Q |
218 |
cttactgatgataacacttgtcttgatggctttgctggtccttccatgaatggaattgttaaggctgccatcaaggacagggttgtcaatgttgctcaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544786 |
cttactgatgataacacttgtcttgatggctttgctggtccttccatgaatggaattgttaaggctgccatcaaggacagggttgtcaatgttgctcaag |
3544885 |
T |
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| Q |
318 |
ttaccagcaacacactcgctttg |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
3544886 |
ttaccagcaacacactcgctttg |
3544908 |
T |
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