View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_1 (Length: 782)
Name: NF10612_low_1
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 285 - 771
Target Start/End: Complemental strand, 40668515 - 40668028
Alignment:
| Q |
285 |
ttgaatgaagcagcatacacatatactttactactttattaccatgggaacaaaatcatgagtgagaagtatattgcttggtctcatatccctatgaata |
384 |
Q |
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| T |
40668515 |
ttgaatgaagaagcatacacatatactttactactttattaccatgggaacaaaatcatgagtgagaagtatattgcttggtctcatatccctatgaata |
40668416 |
T |
|
| Q |
385 |
ataggaccacctcgacattcctcatgtagaaaacgcaatccctttgcaatcccaagtgcaataccatatctttgagaccaatcaagaactgcttcactat |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40668415 |
ataggaccacctcgacattcctcatgtagaaaacgcaatccctttgcaatcccaagtgcaataccatatctttgagaccaatcaagaactgcttcactat |
40668316 |
T |
|
| Q |
485 |
tttctacaacaaaataaaaaccttagagtgcctttaaagtatactt-gttagacttgaagataagataaaacaacataaggcacttaccaaataaatgcc |
583 |
Q |
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| T |
40668315 |
tttctacaacaaaataaaaatcttagagtgcctttaaagtatactttgttagacttgaagataagataaaacaacataaggcacttaccaaataaatgcc |
40668216 |
T |
|
| Q |
584 |
aatgaagagacttattgcaaatatattcatatatgagaatatttttattttctttgcaacaataccccaacagcatcactatattcttgtgtctagcaaa |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40668215 |
aatgaagagacttattgcaaatatattcatatatgagaatatttttattttctttgcaacaataccccaacagcatcactatattcttgtgtctagcaaa |
40668116 |
T |
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| Q |
684 |
actcaagacataaacctcagaatgaaattcagaaaacccttgtgcactttcttctttccttacttttgcagctatttgatgtccatct |
771 |
Q |
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| T |
40668115 |
actcaagacataaacctcagaatgaaattcagaaaacccttgtgcactttcttctttccttacttttgcagctatttgttgtccatct |
40668028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 40668798 - 40668532
Alignment:
| Q |
18 |
aattctcacccaaatgttcccattatccttgtttgatgatgatgagaatcatcaccagtattccatttggcaaggccaaagtcagctagctgcattataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40668798 |
aattctcacccaaatgttcccattatccttgtttgatga------gaatcatcaccagtattccatttggcaaggccaaagtcagctagctgcaccatgc |
40668705 |
T |
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| Q |
118 |
atcatatatatttcagttaatcaaccattcacctactatatagtatttgttttagttctctcctaatcctcctttatcaatttgttcatacttatttttg |
217 |
Q |
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| T |
40668704 |
attatttagacaa-atttaatcaaccattcacctactatatagtatttgttttagttctctcctaatcctcctttatcaatttgttcatacttatttctg |
40668606 |
T |
|
| Q |
218 |
tacattaactgatctagtttcgtaaatgaagcctagtaccaattatattatatatctaaggaaaacattgaatgaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40668605 |
tacattaactgatctagtttcgtaaatgaagcctagtacc--ttatattatatatctaaggaaaacattgaatgaa |
40668532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 572 - 706
Target Start/End: Complemental strand, 4301817 - 4301683
Alignment:
| Q |
572 |
caaataaatgccaatgaagagacttattgcaaatatattcatatatgagaatatttttattttctttgcaacaataccccaacagcatcactatattctt |
671 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
4301817 |
caaataaataccaatgaagagacttatcgcaaataaattcatatatgataatatttttattttctttgcaacagtaccccaacaacatcactatattctt |
4301718 |
T |
|
| Q |
672 |
gtgtctagcaaaactcaagacataaacctcagaat |
706 |
Q |
| |
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|| ||||||||||||||||||||| || ||||||| |
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| T |
4301717 |
gtatctagcaaaactcaagacatacacttcagaat |
4301683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 4301874 - 4301817
Alignment:
| Q |
431 |
caatcccaagtgcaataccatatctttgagaccaatcaagaactgcttcactattttc |
488 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||| |
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| T |
4301874 |
caatcccaagtgcaataccatatcttcgaggccaatcaataactacttcactattttc |
4301817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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