View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_12 (Length: 249)
Name: NF10612_low_12
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9433292 - 9433053
Alignment:
| Q |
1 |
tcactactacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9433292 |
tcactactacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttgg |
9433193 |
T |
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| Q |
101 |
aagcgagttcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9433192 |
aagcgagttcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatc |
9433093 |
T |
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| Q |
201 |
gaagatactggatcttcttgttcgcatggatcttcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
9433092 |
gaagatactggatcttcttgttcgcatggatcttcctatg |
9433053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 3834278 - 3834070
Alignment:
| Q |
10 |
caagctgaataagcatattcactaaaagcttgagaaagatctagaaggtctt-gttcagaagttgatgattttccggatttgtgattcttggaagcgagt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||| ||| |
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| T |
3834278 |
caagctgaataagcatattcactaaaagcttgagaacgatctagaagctcttagttcaaaagttgatgattttccatatttgttattcttggaagcaagt |
3834179 |
T |
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| Q |
109 |
tcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatcgaagatac |
208 |
Q |
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|| ||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
3834178 |
tcgccgagacagaggtcgacgacggaatcgatgagacttttcgatacacaggtggatctttcggtgaaagtgcaactactgttatcttcatcgaagatac |
3834079 |
T |
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| Q |
209 |
tggatcttc |
217 |
Q |
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||||||||| |
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| T |
3834078 |
tggatcttc |
3834070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48677681 - 48677442
Alignment:
| Q |
1 |
tcactactacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||| |||||||| |
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| T |
48677681 |
tcactgctacaagctgaataagcatattcactaaaagcttgagaaagattttgaagctcttgttcagaagttgatgattttccatatttgttattcttgg |
48677582 |
T |
|
| Q |
101 |
aagcgagttcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatc |
200 |
Q |
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|||| |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
48677581 |
aagcaagtttgccgagacggaggtcgatgacggaatcggtgagacttttcgatacacaggtggatctttcggtgaaagtgcaactaccgttatcttcatc |
48677482 |
T |
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| Q |
201 |
gaagatactggatcttcttgttcgcatggatcttcctatg |
240 |
Q |
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||||||||| |||||||||||| |||||||||||||||| |
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| T |
48677481 |
gaagatactaaatcttcttgttcacatggatcttcctatg |
48677442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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