View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_17 (Length: 213)
Name: NF10612_low_17
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 44135019 - 44135164
Alignment:
| Q |
20 |
aggcataatattgatgttactctcacacttgcccactattccccatgcgtgaaacttttgattatactttttctaaaacaaagaatgtattgccttacct |
119 |
Q |
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| T |
44135019 |
aggcataatattgatgttactctcacacttgcccactattccccatgcgtgaaacttttgattatactttttctaaaacaaagaatgtattgccttacct |
44135118 |
T |
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| Q |
120 |
tccatataaattattcctagacaattaatcattgtgctccttgtgg |
165 |
Q |
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| T |
44135119 |
tccatataaattattcctagacaattaatcattgtgctccttgtgg |
44135164 |
T |
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Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 50052030 - 50052196
Alignment:
| Q |
20 |
aggcataatattgatgttactctcacacttgcccactattccccatgcgtgaaacttttgattatactttttctaaaacaaagaatgtattgccttacct |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
50052030 |
aggcataatattgatgttactc--acacttgcccactattccccatgcgtgaaacttttgattatactttttctaaaacaaagaatgtattgcc-tccct |
50052126 |
T |
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| Q |
120 |
tccatataaattattcctagacaattaatcattgtgctccttgtggcttgtgggagttaaccgtctccactatcaaa |
196 |
Q |
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| T |
50052127 |
tccatacaaattattcctggacaattaatcattgtgctc-------cttgtgggagttaaccgtctccactatcaaa |
50052196 |
T |
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