View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_2 (Length: 449)
Name: NF10612_low_2
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 32269842 - 32269598
Alignment:
| Q |
19 |
ggatcagtgtgattgagtgtggagatttcatatggggatataatttgtaatcatggaatgtggtctactgcaaatgtcatgtgctttggagttatagtgt |
118 |
Q |
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| T |
32269842 |
ggatcagtgtgattgagtgtggagatttcatatggggatataatttgtaatcatggaatgtggtctactgcaaatgtcatgtgctttggagttatagtgt |
32269743 |
T |
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| Q |
119 |
tgttagannnnnnngaggggcatgtgttgttccgtttgctgtttgctgcataaagtaattcnnnnnnnnnctctccataatattagtataaagtatcaac |
218 |
Q |
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| T |
32269742 |
tgttagatttttttgaggggcatgtgttgttccgtttgctgtttgctgcataaagtagttcattttttttctctccataatattagtataaagtatcaac |
32269643 |
T |
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| Q |
219 |
cgttgcttaacaatgactaatctgcattgaaaaacatgtagggcg |
263 |
Q |
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| T |
32269642 |
cgttgcttaacaatgattaatctgcattgaaaaacatgtagggcg |
32269598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 263 - 442
Target Start/End: Complemental strand, 32269534 - 32269355
Alignment:
| Q |
263 |
gatcatatatttaattagtctaagtttcttaccacttggatcaatcattgttggtaagcaatgcaacctttaactttcttaattttatgcattcaatgtt |
362 |
Q |
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| T |
32269534 |
gatcatatatttaattagtctaaatttcttaccacttggaccaatcattgttggtaagcaatgcaatctttaactttcttaattttatgcattcaatgtt |
32269435 |
T |
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| Q |
363 |
attttgtttggtggtgacattcaatgttatttaaacaaaacccataaatttcacttatatattccacttctttcatctca |
442 |
Q |
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| T |
32269434 |
attttgtttggtggtgacattcaatgttatttaaacaaaacccataaatttcacttatatattccacttctttcatctca |
32269355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 32809524 - 32809420
Alignment:
| Q |
338 |
ttcttaattttatgcattcaatgttattttgtttggtggtgacattcaatgttatttaaacaaaacccataaatttcacttatatattccacttctttca |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||| || |
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| T |
32809524 |
ttcttaattttatgcattcaatgttattttgtttggtggtgacattcaatgttatttaaacacaacccacccacttcacttatttattccacttcttaca |
32809425 |
T |
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| Q |
438 |
tctca |
442 |
Q |
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| T |
32809424 |
tctca |
32809420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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