View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_3 (Length: 442)
Name: NF10612_low_3
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 110 - 437
Target Start/End: Complemental strand, 39901986 - 39901659
Alignment:
| Q |
110 |
ctcctaaactgcatgactaagcattaatatcatgcacattgtcttgctgcactgtaggacgactcttaattgtttttacctctccaagttttcagctaat |
209 |
Q |
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| T |
39901986 |
ctcctaaactgcatgactaagcattaatatcatgcacattgtcttgctgcactgtaggacgactcttaattgtttttacctctccaagttttcagctaat |
39901887 |
T |
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| Q |
210 |
tcatggaaggatacttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtggattctttgccaaaacga |
309 |
Q |
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| T |
39901886 |
tcatggcaggatacttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtggattctttgccaaaacga |
39901787 |
T |
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| Q |
310 |
ttcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtattttgcttacacat |
409 |
Q |
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| T |
39901786 |
ttcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtattttgcttacacat |
39901687 |
T |
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| Q |
410 |
tccccgaatcaactcatgatgtccatct |
437 |
Q |
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| T |
39901686 |
tccccgaatcaactcatgatgttcatct |
39901659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 39902114 - 39902016
Alignment:
| Q |
15 |
acaatacacgaatatagtgaacgattgagaatacaattatataggtttattttggtatatgaatcaggttcacaaactcattacagtgacagatactcc |
113 |
Q |
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| T |
39902114 |
acaatacacgaatatagtgaacgattgagaatacaattatataggtttattttggtatacgaatcaggttcacaaactcattacagtgacagatactcc |
39902016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 39913701 - 39913630
Alignment:
| Q |
356 |
tctattcagatgtatttgaagttggtggctataaatggtattttgcttacacattccccgaatcaactcatg |
427 |
Q |
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| T |
39913701 |
tctattcagatgtatttgaagctgggggctataaatggtattgtgcttacacattccctgaatcaattcatg |
39913630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 39902147 - 39902194
Alignment:
| Q |
134 |
taatatcatgcacattgtcttgctgcactgtaggacgactcttaattg |
181 |
Q |
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| T |
39902147 |
taatataatgcacattgtctcgctgcactgtagaacgactcttaattg |
39902194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 37477029 - 37476959
Alignment:
| Q |
223 |
cttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtgga |
293 |
Q |
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| T |
37477029 |
cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgga |
37476959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 39868266 - 39868225
Alignment:
| Q |
356 |
tctattcagatgtatttgaagttggtggctataaatggtatt |
397 |
Q |
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| T |
39868266 |
tctattcagatgtatttgaagttgggggttacaaatggtatt |
39868225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 39732729 - 39732765
Alignment:
| Q |
360 |
ttcagatgtatttgaagttggtggctataaatggtat |
396 |
Q |
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| T |
39732729 |
ttcagatgtatttgatgttgggggctataaatggtat |
39732765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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