View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_6 (Length: 356)
Name: NF10612_low_6
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 32587117 - 32586821
Alignment:
| Q |
1 |
ataatctcttgggtttgtattcatattgggagctaaaacgttaatgttttcttttagggttgggaatgggaaattagatttctcaatttaatgatgtaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32587117 |
ataatctcttgggtttgtattcatattgggagctaaaacgttaatgttttctttttgggttgggaatgggaaattagatttctcaatttaatgatgtaga |
32587018 |
T |
|
| Q |
101 |
cctacctataatttatggcaaccaacattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaaccaatctttttcctactaggtcg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32587017 |
cctgcctataatttatggcaaccaacattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaaccaatctttttcctactaggtcg |
32586918 |
T |
|
| Q |
201 |
gatcgtttatatgtataaattgatgcctatagtcctgtcatgtattaggtccaaatatagatcatctacctctaaatccttcttcatgacttgacct |
297 |
Q |
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| T |
32586917 |
ggtcgtttatatgtataaattgatgcctatagtcctgtcatgtattaggtccaaatatagatcatctacctctaaatccctcttcatgacttgacct |
32586821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 32662579 - 32662236
Alignment:
| Q |
1 |
ataatctcttgggtttgtattcatattgggagctaaaacgttaatgttttcttttagggttgggaatgggaaattagatttctcaatttaatgatgtaga |
100 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32662579 |
ataagctcttgggtttgtattcatatggggagctaaaacgttaatgttttctttttgggttgggaatgggaaattagatttctcaatttaatgatgtaga |
32662480 |
T |
|
| Q |
101 |
cctacctataatttatggcaaccaacattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaaccaatctttttcctactaggtcg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32662479 |
cctgcctataatttatggcaaccaacattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaaccagtctttttcctactaggtcg |
32662380 |
T |
|
| Q |
201 |
gatcgtttatatgtataaattgatgcctatagtcctgtcatgtattaggtccaaatatagatcatctacctctaaatccttcttcatgacttgacctaaa |
300 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||| | |
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| T |
32662379 |
gatcgtttatatgtatcaattgatgccaacagtcctgtcatgtattaggtccaaagatagatcatctacctttaaatctttcttcatgatttgac--att |
32662282 |
T |
|
| Q |
301 |
tttttcttgatctccctctctacctctaacaattggattattcttc |
346 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
32662281 |
tttttcttgatctccctctctacctccaactattggatcattcttc |
32662236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 32636897 - 32636555
Alignment:
| Q |
9 |
ttgggtttgtattcatattgggagctaaaacgttaatgttttcttttagggttgggaatgggaaattagatttctcaatttaatgatgtagacctaccta |
108 |
Q |
| |
|
||||||||||||| ||||||||| || ||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32636897 |
ttgggtttgtattaatattgggatctggaacattgatgttttctttttgggttgggaatgggaaattagatttctcaatttaatgatgtagacctgccta |
32636798 |
T |
|
| Q |
109 |
taatttatggcaaccaa--------cattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaaccaatctttttcctactaggtcg |
200 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||| || |||| |||| |
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| T |
32636797 |
taatttatggcaaccaagtgaccaacattgattcgtttgtcaaaaagcaatcacagatggtgaagaaaaaacaacaactagtcttctt---actaagtcg |
32636701 |
T |
|
| Q |
201 |
gatcgtttatatgtataaattgatgcctatagtcctgtcatgtattaggtccaaatatagatcatctacctctaaatccttcttcatgacttgacctaaa |
300 |
Q |
| |
|
|||||||||||||||| | |||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||| || |
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| T |
32636700 |
gatcgtttatatgtatcacttgatgccaacagtcctgtcatgtattaggtccaaagatagatcatctacctttaaatctttcttcatgatttgacatatt |
32636601 |
T |
|
| Q |
301 |
tttttcttgatctccctctctacctctaacaattggattattcttc |
346 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
32636600 |
tttttcctgatctccctctctacctccaactattggatcattcttc |
32636555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 41142641 - 41142359
Alignment:
| Q |
1 |
ataatctcttgggtttgtattcatattgggagctaaaacgttaatgttttcttttagggttgggaatgggaaattagatttctcaatttaatgatgtaga |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||| | ||| |||||||| || ||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
41142641 |
ataagctcttgggtttgtattcatgttgggagctagagttttattgttttctgtttgggttgg-aatgggaagttagatttctcaatttaatgatgtagt |
41142543 |
T |
|
| Q |
101 |
c--------ctacctataatttatggcaaccaacattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaaccaatctttttccta |
192 |
Q |
| |
|
| || |||||||||||| ||||||| |||| |||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
41142542 |
catgtaggcctgcctataatttatagcaaccatcattaattcatttttcagaaagcaatcactgatagtgaagaaaaaacaacaaccaatctttttccta |
41142443 |
T |
|
| Q |
193 |
ctaggtcggatcgtttatatgtataaattgatgcctatagtcctgtcatgtattaggtccaaatatagatcatctacctctaaat |
277 |
Q |
| |
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|||||| | || || |||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41142442 |
ctaggtggtat-gtctatatggatcaattgatgcaaatagtcctgtcatgtattaggtccaaagatagatcatctacctctaaat |
41142359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 55863411 - 55863587
Alignment:
| Q |
1 |
ataatctcttgggtttgtattcatattgggagctaaaacgtt--aatgttttcttttagggttgggaatgggaaattagatttctcaatttaatgatgta |
98 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| || ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| | || |
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| T |
55863411 |
ataagctcttgggtttgtattaatattgggatctggaacatatgaatgttttctttttgggttgggaatgggaaattagatttctcaatttaacg---ta |
55863507 |
T |
|
| Q |
99 |
gacctacctataatttatggcaaccaacattgattcatttgtcaaaaagcaatcacgaatggtgaagaaaaaacaacaac |
178 |
Q |
| |
|
||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
55863508 |
gacttgcctataatttatggcaaccaacgttgattcatttttcaaaaagcaatcacgaatgccgaagaaaaaacaacaac |
55863587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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