View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10612_low_7 (Length: 325)
Name: NF10612_low_7
Description: NF10612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10612_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 9489294 - 9488989
Alignment:
| Q |
1 |
ctatttatcccgatgtacatggcatataaatggagaaggaggcatttatctgcatatgattcagttgaagagtttcttaaatctcacaataatctcatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9489294 |
ctatttatcccgatgtacatggcatataaatggagaaggaggcatttatcggcatatgattcagttgaagagtttcttaaatctcacaataatctcatgc |
9489195 |
T |
|
| Q |
101 |
caataagatactcttactcggacattnnnnnnntgacgaaaggatttaaggataaacttggcgaaggtggctatggttctgtttacaaaggacaacttcg |
200 |
Q |
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| T |
9489194 |
caataagatactcttactcagacattaaaaaaatgacaaaaggatttaaggataaacttggcgaaggtggctatggttctgtttacaaaggacaacttcg |
9489095 |
T |
|
| Q |
201 |
caacggtcacctagtagcaatcaagttgctaggtggaaagtcaagagcaaatggacaggaattcatcaatgaagttgctacgattggaacgattcaccat |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9489094 |
caacggtcacctagtcgcaatcaagttgctaggtggaaagtcaagagcaaatggacaggaattcatcaatgaagttgctacgattggaacgattcaccat |
9488995 |
T |
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| Q |
301 |
gttaac |
306 |
Q |
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|||||| |
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| T |
9488994 |
gttaac |
9488989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 9464836 - 9464642
Alignment:
| Q |
1 |
ctatttatcccgatgtacatggcatataaatggagaaggaggcatttatctgcatatgattcagttgaagagtttcttaaatctcacaataatctcatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9464836 |
ctatttatcccgatgtacatggcatataaatggagaaggaggcatttatctgcatatgattcagttgaagagtttcttaaatctcacaataatctcatgc |
9464737 |
T |
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| Q |
101 |
caataagatactcttactcggacattnnnnnnntgacgaaaggatttaaggataaacttggcgaaggtggctatggttctgtttacaaaggacaa |
195 |
Q |
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| T |
9464736 |
caataagatactcttactcggacattaaaaaaatgacaaaagaatttaatgataaacttggcgaaggtggctatggttctgtttacaaaggacaa |
9464642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 9464622 - 9464558
Alignment:
| Q |
241 |
tcaagagcaaatggacaggaattcatcaatgaagttgctacgattggaacgattcaccatgttaa |
305 |
Q |
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| T |
9464622 |
tcaagagcaaatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaa |
9464558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 40126775 - 40126739
Alignment:
| Q |
152 |
ataaacttggcgaaggtggctatggttctgtttacaa |
188 |
Q |
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| T |
40126775 |
ataaacttggagaaggtggctttggttctgtttacaa |
40126739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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