View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10613_low_1 (Length: 447)
Name: NF10613_low_1
Description: NF10613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10613_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 45684218 - 45683998
Alignment:
| Q |
19 |
gtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatttaatgta |
118 |
Q |
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| T |
45684218 |
gtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatctaatgta |
45684119 |
T |
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| Q |
119 |
ttctataatatttatcagacataaatatccatcgctttgtgc-ttttgatatttttgctctcacttttgaacctatttagtcttcgcacctgcannnnnn |
217 |
Q |
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| T |
45684118 |
ttctataatatttatcagacataaatatccatcgctttgtgctttttgatatttttgctctcacttttgaacctatttagtcttcgcgcctgcatttttt |
45684019 |
T |
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| Q |
218 |
nnggttactatttatggaatc |
238 |
Q |
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| T |
45684018 |
ttggttactatttatggaatc |
45683998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 259 - 447
Target Start/End: Complemental strand, 45683917 - 45683729
Alignment:
| Q |
259 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
358 |
Q |
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| T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
45683818 |
T |
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| Q |
359 |
tgctgctgagatagttctaggaacatgtacccaatatcttgattcaaatggtcaacgacaatctattgaagaagagaaggttaggaata |
447 |
Q |
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| T |
45683817 |
tgctgctgagatagttctaggaacatgtacccaatatcttgattcaaatggtcaacgacaatctattgaagaagagaaggttaggaata |
45683729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 16691130 - 16691185
Alignment:
| Q |
323 |
gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttctag |
378 |
Q |
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| T |
16691130 |
gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttctag |
16691185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 1443415 - 1443539
Alignment:
| Q |
321 |
tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttctaggaacatgtacccaatatcttgattcaaatggtcaacgacaat |
420 |
Q |
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| T |
1443415 |
tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttctaggagcatgtacccaatatcttgattcaaatagtcacctgcaat |
1443514 |
T |
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| Q |
421 |
ctattgaagaagagaaggttaggaa |
445 |
Q |
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| T |
1443515 |
ccatcgaacaagagaaggttaggaa |
1443539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 1443117 - 1443193
Alignment:
| Q |
31 |
aattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatccttt |
107 |
Q |
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| T |
1443117 |
aattccgagaaaaaacgaggcggtgttgctctgaagctggtaataatttgatcaaaatatttaccaattcatccttt |
1443193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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