View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10613_low_7 (Length: 227)
Name: NF10613_low_7
Description: NF10613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10613_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 13476477 - 13476612
Alignment:
| Q |
1 |
tcttgatttgggtgggccattcccacatttattatgaatgacttatgttacacattcaaatatttcaaatataaacggtttgctagttgagcttcgagtt |
100 |
Q |
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| T |
13476477 |
tcttgatttgggtgggccatgcccacatttactatgattgacttaggttacacattcaaatatttcaaatataaacggtttgc----tgagtttcgagta |
13476572 |
T |
|
| Q |
101 |
taattcggttggtatgaacaatgcatagtatatttaaggt |
140 |
Q |
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| T |
13476573 |
taactcagctggtatggacaatgcatagtatatttaaggt |
13476612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 13477133 - 13477206
Alignment:
| Q |
154 |
acgtgtttgcagttgcaaattgaatccatatattttcttaaaatatatttagtcgtataacttaagtgcaatca |
227 |
Q |
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| T |
13477133 |
acgtgtttgcagttacaaattcaatccatatattttcttaaaatatatttagtcatatcaattaagtgcaatca |
13477206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 685050 - 685010
Alignment:
| Q |
99 |
tttaattcggttggtatgaacaatgcatagtatatttaagg |
139 |
Q |
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| T |
685050 |
tttaattcagttggtatgaacaatgcatattatatgtaagg |
685010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 50380891 - 50380851
Alignment:
| Q |
100 |
ttaattcggttggtatgaacaatgcatagtatatttaaggt |
140 |
Q |
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||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
50380891 |
ttaattcagttggtatgaacaatgcataatatatgtaaggt |
50380851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 32957602 - 32957558
Alignment:
| Q |
96 |
gagtttaattcggttggtatgaacaatgcatagtatatttaaggt |
140 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
32957602 |
gagtttagctcggttggtatgaacaatgcataatatatgtaaggt |
32957558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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