View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10614_high_4 (Length: 247)
Name: NF10614_high_4
Description: NF10614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10614_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 12635695 - 12635918
Alignment:
| Q |
21 |
tgtcatctatatcttgaacctcagaatttcttgcccagcaaatacctttctcagtccaatatctaaaaaatttaaattacatttatcaaatgaataatca |
120 |
Q |
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| T |
12635695 |
tgtcatctatatcttgaacctatgaatttcttgcccagcaaatacctttctcaatccaatatctaaaaaaattaaattacatttatcaagtgaataatca |
12635794 |
T |
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| Q |
121 |
tatag-agacaatgcaggtacgttttctaatgttcacac---nnnnnnnncaagtatttgcaaattgtaaatcaacttattttgtgtgtaccttgacaca |
216 |
Q |
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| T |
12635795 |
tatagaagacaatgcaggtatgttttctcacgttcacactttttttcttcaaagtatttgcaaattgtaaatcaagttattatgtgtgtaccttgacaca |
12635894 |
T |
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| Q |
217 |
taattcacagattctttcatctct |
240 |
Q |
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| T |
12635895 |
taattcaccgattctttgatctct |
12635918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 37959022 - 37958905
Alignment:
| Q |
19 |
tgtgtcatctatatcttgaacctcagaatttcttgcccagcaaatacctttctcagtccaatatctaaaaaatttaaattacatttatcaaatgaataat |
118 |
Q |
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| T |
37959022 |
tgtgtcgtctatatcttgaacctctgaatttctcgcccagcaaatacctttcttagtccaatatctataaattttaaattacatttatcaagtgagtaat |
37958923 |
T |
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| Q |
119 |
catatag-agacaatgca |
135 |
Q |
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| T |
37958922 |
catatagaagacaatgca |
37958905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 37958863 - 37958809
Alignment:
| Q |
171 |
tatttgcaaattgtaaatcaacttattttgtgtgtaccttgacacataattcaca |
225 |
Q |
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| T |
37958863 |
tatttgcaaattgtaaatcaacttatcatttatgtaccttgacacataatccaca |
37958809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 3182003 - 3182068
Alignment:
| Q |
19 |
tgtgtcatctatatcttgaacctcagaatttcttgcccagcaaatacctttctcagtccaatatct |
84 |
Q |
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| T |
3182003 |
tgtgtcgtcaatatcttgaacatttgaatttcttgcccaacaaatgcccttttcagtccaatatct |
3182068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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