View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10614_low_10 (Length: 235)
Name: NF10614_low_10
Description: NF10614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10614_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 1849836 - 1849672
Alignment:
| Q |
55 |
atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaa |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1849836 |
atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa |
1849737 |
T |
|
| Q |
155 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1849736 |
cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
1849672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 1163930 - 1164094
Alignment:
| Q |
55 |
atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaa |
154 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||| |
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| T |
1163930 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
1164029 |
T |
|
| Q |
155 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
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| T |
1164030 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaat |
1164094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 3299352 - 3299201
Alignment:
| Q |
68 |
ataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaagg |
167 |
Q |
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| T |
3299352 |
ataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg |
3299253 |
T |
|
| Q |
168 |
taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||||| ||||| |
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| T |
3299252 |
taaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaat |
3299201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 3392245 - 3392094
Alignment:
| Q |
68 |
ataccgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaagg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3392245 |
ataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg |
3392146 |
T |
|
| Q |
168 |
taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||| ||||| |
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|
| T |
3392145 |
taaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaat |
3392094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 40418140 - 40417993
Alignment:
| Q |
72 |
cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa |
171 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||| | ||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||| |
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| T |
40418140 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa |
40418041 |
T |
|
| Q |
172 |
tggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||| ||||| |
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|
| T |
40418040 |
tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaat |
40417993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 38987550 - 38987415
Alignment:
| Q |
72 |
cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa |
171 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||| | ||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||| |
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| T |
38987550 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa |
38987451 |
T |
|
| Q |
172 |
tggatcaagcaaagtaaatgttctggcaaccctagt |
207 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
38987450 |
tggatcaagcaaagtaaatgttttggcaaccctagt |
38987415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 39726263 - 39726128
Alignment:
| Q |
72 |
cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa |
171 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||| | ||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||| |
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| T |
39726263 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa |
39726164 |
T |
|
| Q |
172 |
tggatcaagcaaagtaaatgttctggcaaccctagt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
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| T |
39726163 |
tggatcaagcaaagtaaatgttttggcaaccctagt |
39726128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 39879665 - 39879530
Alignment:
| Q |
72 |
cgagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaa |
171 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||| | ||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||| |
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|
| T |
39879665 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa |
39879566 |
T |
|
| Q |
172 |
tggatcaagcaaagtaaatgttctggcaaccctagt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
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|
| T |
39879565 |
tggatcaagcaaagtaaatgttttggcaaccctagt |
39879530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 39168749 - 39168604
Alignment:
| Q |
74 |
agaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaatg |
173 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||| || ||||||||||| |||||| ||||||||||||| || | ||||||||||||| |
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|
| T |
39168749 |
agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg |
39168650 |
T |
|
| Q |
174 |
gatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
| |
|
||||||| ||||||| | || ||||||||||||| || |||||||| |
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|
| T |
39168649 |
gatcaagtaaagtaatttttttggcaaccctagtgcatataacaat |
39168604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 39399751 - 39399637
Alignment:
| Q |
73 |
gagaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaat |
172 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| ||||||| || ||| ||||||| |||||| |||||||||||||| || | ||||||||||||| |
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|
| T |
39399751 |
gagaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaat |
39399652 |
T |
|
| Q |
173 |
ggatcaagcaaagta |
187 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39399651 |
ggatcaagcaaagta |
39399637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 25912530 - 25912675
Alignment:
| Q |
74 |
agaacaacatattccactaactgatgcctagagaatgaaggcaggaagggtgcatcccagtaacgatcagcctttaagaaacagtgggtcaaggtaaatg |
173 |
Q |
| |
|
||||||| |||||| ||||||||| |||||| |||| ||||| ||||||||||| |||||| |||||||||| |||||||| || ||||||||||||| |
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|
| T |
25912530 |
agaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatg |
25912629 |
T |
|
| Q |
174 |
gatcaagcaaagtaaatgttctggcaaccctagtacaaataacaat |
219 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
25912630 |
gatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaat |
25912675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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