View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10614_low_11 (Length: 227)
Name: NF10614_low_11
Description: NF10614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10614_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 26912820 - 26912870
Alignment:
| Q |
175 |
gaatgggttaatgacgcaagaaaaaaggagaaatagtattgtgactgaaac |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
26912820 |
gaatgggttaatgacgcaagaaaaaaggagaagcagtattgtgagtgaaac |
26912870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 26912768 - 26912803
Alignment:
| Q |
122 |
aattataagttgggacctagctagccagtacacatt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26912768 |
aattataagttgggacctagctagccagtacacatt |
26912803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26912642 - 26912674
Alignment:
| Q |
1 |
aattaaaggtaatttatactaatttcactatgg |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26912642 |
aattaaaggtaatttatactaatttcactatgg |
26912674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University