View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10614_low_3 (Length: 370)
Name: NF10614_low_3
Description: NF10614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10614_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 1566427 - 1566088
Alignment:
| Q |
18 |
aaatacatctgtcggtgttggacaccagactggcctgtgatgtgaaatgccggtggtgctacacaggctaggataacaacgtatttcaatctagaataaa |
117 |
Q |
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| T |
1566427 |
aaatacatctgtcggtgttggacaccagactggcctgtgatgtgaaatgccggtggtgctacacaggctaggataacaacgtatttcaatctagaataaa |
1566328 |
T |
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| Q |
118 |
aattgataggtgattgaattgaagtatttttcatatatacgttatgcatacctcatcgatcataggcaggaattcagcagcaggttggaataaattaact |
217 |
Q |
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| T |
1566327 |
aattgataggtgattgaattgaagtatttttcatatatacgttatgcatacctcatcgatcataggcaggaattcagcagcaggttggaataaattaact |
1566228 |
T |
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| Q |
218 |
tccttaccctgtaattttagaagattataaatcaatatagggaccctttagaaagatacttctagaactagatagacaaagtgaagtaatatcagaaaca |
317 |
Q |
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| T |
1566227 |
tccttaccctgtaattttagaagattataaatcaatatagggaccctttagaaagatacttctagaactagatagacaaagtgaagtaatatcagaaaca |
1566128 |
T |
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| Q |
318 |
tatgctagatagaaacgatgaattaaaaaccggtaccttc |
357 |
Q |
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| T |
1566127 |
tatgctagatagaaacgatgaattaaaaactggtaccttc |
1566088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 12907940 - 12908009
Alignment:
| Q |
167 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaacttccttaccctgtaatttta |
236 |
Q |
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| T |
12907940 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaatttta |
12908009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 13312195 - 13312146
Alignment:
| Q |
167 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaac |
216 |
Q |
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| T |
13312195 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaac |
13312146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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