View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10614_low_4 (Length: 364)
Name: NF10614_low_4
Description: NF10614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10614_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 54562 - 54226
Alignment:
| Q |
18 |
ctattgagcaaccatcgaagaagaatgtattctgttttgggacttagtgtgttgtcttggtttatatgtcacaacccatcaattataatagggttgaaca |
117 |
Q |
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| T |
54562 |
ctattgagcaaccatcgaagaagaatgtattctgttttgggacttagtgtgttgtcttggtttatatgtcacaacccatcaattataatagggttgaaca |
54463 |
T |
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| Q |
118 |
actagtagtttggatgaaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaacatcagttatgga--tataagtgtttggaa |
215 |
Q |
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| T |
54462 |
actagtagtttggatgaaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaacatcagttatggatatataagtgtttggaa |
54363 |
T |
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| Q |
216 |
aagtcatcaaatttgtgccgtctggatgtgtgctttttgacaatttgtacagtccggatgcattatttttagcagtgagaaagaaacagtgatctttatc |
315 |
Q |
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| T |
54362 |
aagtcatcaaatttgtgccgtctggatatgtgctttttgacaatttgtacagtccggatgcattatttttagcagtgagaaagaaacagtgatctttatc |
54263 |
T |
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| Q |
316 |
ttgaatactaaatgtggaagaggactgccacaggttc |
352 |
Q |
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| T |
54262 |
ttgaatactaaatgtggaagaggactgccacaggttc |
54226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 33754197 - 33754087
Alignment:
| Q |
90 |
aacccatcaattataatagggttgaacaactagtagtttggatgaaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaaca |
189 |
Q |
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| T |
33754197 |
aacccatcaactataatagggttggacgactagtactctggatgaaattcaagttatctttagggcactg-ttttccttagcccttaa----catcaaca |
33754103 |
T |
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| Q |
190 |
tcagttatggatataa |
205 |
Q |
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| T |
33754102 |
tcagttacggatataa |
33754087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 33753944 - 33753868
Alignment:
| Q |
202 |
ataagtgtttggaaaagtcatcaaatttgtgccgtctggatgtgtgctttttgacaatttgtacagtccggatgcat |
278 |
Q |
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||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
33753944 |
ataagtgtttgcaaaattcatcaaatttgtgttgtctggatttgtgctttttgacaatttgtacggtctggatgcat |
33753868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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